Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3466 122 1e-22 seq3799 116 4e-21 seq3372 116 4e-21 seq3432 114 1e-20 seq2153 111 2e-19 seq15 109 6e-19 seq3463 102 9e-17 >seq3466 Length=1849564 Score = 122 bits (134), Expect = 1e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1025299 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1025358 Query 60117 TCACCACTATACTACCGAGGAT--TGAATAT 60145 | |||||||||||||||||||| ||||||| Sbjct 1025359 TTACCACTATACTACCGAGGATTATGAATAT 1025389 Score = 120 bits (132), Expect = 3e-22 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 60052 TTATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||||||||| ||| |||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 1112738 TTATGAAAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1112679 Query 60110 GACATACTCACCACTATACTACCGAGGATT 60139 | ||||| ||||||||||||||||||||| Sbjct 1112678 GGGATACTTACCACTATACTACCGAGGATT 1112649 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||| |||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 1024015 AAAAGTTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1024074 Query 60115 ACTCACCACTATACTACCGAGGATT 60139 ||| ||||||||||||||||||||| Sbjct 1024075 ACTTACCACTATACTACCGAGGATT 1024099 >seq3799 Length=1659003 Score = 116 bits (128), Expect = 4e-21 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 445325 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 445266 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 445265 CTTACCACTATACTACCGAGGATT 445242 >seq3372 Length=258379 Score = 116 bits (128), Expect = 4e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 159618 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 159677 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 159678 TTACCACTATACTACCGAGGACTG 159701 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 109835 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 109894 Query 60115 ACTCACCACTATACTACCGAGGATT 60139 ||| ||||||||||||||||||||| Sbjct 109895 ACTTACCACTATACTACCGAGGATT 109919 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 146330 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 146271 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || |||||||||||||||||||||| Sbjct 146270 CTTACCACTATACTACCGAGGATTG 146246 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| ||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 106503 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 106444 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 106443 CTTACCACTATACTACCGAGGATT 106420 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 139724 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 139783 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 139784 CTTACCACTATACTACCGAGGA 139805 >seq3432 Length=246084 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 64338 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 64397 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 64398 TTACCACTATACTACCGAGGA 64418 >seq2153 Length=1080828 Score = 111 bits (122), Expect = 2e-19 Identities = 75/83 (90%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 203803 AAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 203744 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||||||||||| Sbjct 203743 CTTACCACTATACTACCGAGGAT 203721 >seq15 Length=696860 Score = 109 bits (120), Expect = 6e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 308089 AAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 308030 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 308029 CTTACCACTATACTACCGAGGA 308008 >seq3463 Length=219725 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| |||| |||| ||||||||||||| |||||||||||||||||||| ||||| Sbjct 8586 AAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGAGGATACTT 8527 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 8526 ACCACTATACTACCGAGGA 8508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571788866165600