Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1800 96.9 5e-15 seq3688 87.8 3e-12 >seq1800 Length=381758 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || | ||||||||||| || || |||||||| Sbjct 276147 CCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 276088 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| || |||||||| ||||| | |||||||||||||||| Sbjct 276087 AGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGA 276028 Query 146171 ATTCCT 146176 || ||| Sbjct 276027 ATACCT 276022 >seq3688 Length=1808486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 || ||||||| | || ||| || || |||||| |||||||||||||| || || || Sbjct 946449 TACATTTATTATTGTTCTAGCCGGTGTGATTGACAGTGATTATAGAGGAAACGTTGGCGT 946508 Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600 |||| ||| || |||||| |||| || || ||| |||||| ||| |||||| | | || Sbjct 946509 AATACTATACAACCATTCTGATGATGACTTCATAGTAAATAAAGGCGATAGAGTTGCACA 946568 Query 10601 ATTAATATGTGAAAAAAT 10618 | | || || || || || Sbjct 946569 ACTTATCTGCGAGAAGAT 946586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743489037798400