Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3604 105 4e-18 seq3666 89.7 3e-13 >seq3604 Length=163256 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || | ||| | ||| ||||||||| || |||||||| || Sbjct 66339 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66398 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | |||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 66399 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66458 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | || | || || || | ||||| | Sbjct 66459 GATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66517 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | |||| |||||||||||||| || ||||||||||||||||| |||||| Sbjct 66518 CTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATC 66567 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || | ||| | ||| ||||||||| || |||||||| || Sbjct 65655 TCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65714 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | |||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 65715 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 65774 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | || | || || || | ||||| | Sbjct 65775 GATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 65833 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 65834 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 65882 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || | ||| | ||| ||||||||| || |||||||| || Sbjct 65883 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65942 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | |||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 65943 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66002 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | || | || || || | ||||| | Sbjct 66003 GATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66061 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 66062 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 66110 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || || | ||| | ||| ||||||||| || |||||||| || Sbjct 66111 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66170 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | |||| | || ||||| || || || ||||| || | ||||| ||||| || Sbjct 66171 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66230 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||| ||||| | || | || || || | ||||| | Sbjct 66231 GATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66289 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 66290 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 66338 >seq3666 Length=820529 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| |||||| || |||||||||||||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||| || || || || | ||||| || || || Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| |||||| || | || ||||| | || || || Sbjct 197170 ATACCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAAC 197112 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| ||||| || || | |||||| |||||||||||||| Sbjct 197111 TTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| ||| | |||| ||| ||||| |||||||||||||| Sbjct 198203 TCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 198144 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||| || || || || | || || ||||| || Sbjct 198143 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 198084 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||| | || | || ||||| | ||||| || Sbjct 198083 GATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTAC 198024 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || ||||| || || || ||||| ||||| Sbjct 198023 TTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323056171491200