Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq40 138 1e-27 >seq40 Length=47542 Score = 138 bits (152), Expect = 1e-27 Identities = 150/198 (76%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||||||||||| ||||||||| || |||||||||| || ||||| ||| Sbjct 40204 AAAGTTAAACCTGGCATTAATCCTCGTTTCTTCATCCAAAATAATGCAGCAAAACTTCCA 40145 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || |||||||||||||| || ||||||||||| |||| ||||| | | | | Sbjct 40144 GAGAAAAATATACCTTCAACGGCAGCAAATGCAACTAATCTTTCACCAAAAG---TCGCT 40088 Query 16406 ttactttc---tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 ||||| || |||||| || |||||||| ||| |||| ||| ||||| |||| | Sbjct 40087 TTACTATCGCTTATCCACTTCAGAGCCCAATCTGCCTTTTTTTTTACACACGGCATGGTT 40028 Query 16463 TCTATTGCATTAAATAAA 16480 || || |||||||||||| Sbjct 40027 TCAATAGCATTAAATAAA 40010 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||| | |||| |||||||| || ||| || ||||| |||| |||||||||||| Sbjct 39944 AAATTATTAATACTTTTCTTTTGGGTCCTGAATGTATGTATCAATTAATAAACTATACAT 39885 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||||||||| ||||||||||| ||| ||||| |||||||| |||||||| || | | Sbjct 39884 TTCTGAATGTATATTCTCCATCATTATTTGAAACCCATAAAAACATCTAGCCTCCGTCAC 39825 Query 16594 TTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| ||||| ||| |||| | ||| | | ||||| || || || ||||| ||| | Sbjct 39824 TTGAACTTCTTGAG-AAAATCGTTCAACAAGATTTTCATTGACAATACCATCTGAAGCAG 39766 Query 16653 CAAAAAACGCAAGTATGTG 16671 ||||||| || | || ||| Sbjct 39765 CAAAAAATGCTAATACGTG 39747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462488758772000