Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3666 96.9 3e-15 >seq3666 Length=820529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || || || ||||||||||||||| ||| ||| |||| Sbjct 197275 AACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197216 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||| |||||||| || || || | ||| |||||||| Sbjct 197215 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCT 197156 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||||| | | | || ||| || |||| || || || Sbjct 197155 TGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTT 197096 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || |||| ||| || |||||||| ||||||||| Sbjct 197095 TTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTG 197060 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||||||| ||| ||| |||| Sbjct 198187 AACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 198128 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||| || |||||||| || || | ||| || ||||| Sbjct 198127 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 198068 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | || || || |||| || || ||| Sbjct 198067 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 198008 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||||||||| Sbjct 198007 TTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || || || ||||||||||||||| ||| ||| |||| Sbjct 197503 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197444 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||| || |||||||| || || | ||| || ||||| Sbjct 197443 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197384 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | || || || |||| || || ||| Sbjct 197383 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197324 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||||||||| Sbjct 197323 TTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || || || ||||||||||||||| ||| ||| |||| Sbjct 197731 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197672 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||| || |||||||| || || | ||| || ||||| Sbjct 197671 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197612 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | || || || |||| || || ||| Sbjct 197611 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197552 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||||||||| Sbjct 197551 TTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || || || ||||||||||||||| ||| ||| |||| Sbjct 197959 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197900 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| |||||||| || ||||| || |||||||| || || | ||| || ||||| Sbjct 197899 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197840 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | || || || |||| || || ||| Sbjct 197839 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197780 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || ||||||||||| Sbjct 197779 TTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395055843784420