Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq40 154 1e-32 >seq40 Length=47542 Score = 154 bits (170), Expect = 1e-32 Identities = 171/226 (76%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 ||||||||||| ||| || || || ||||| ||||| |||||||| ||||||||||| Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAA--GTTAAACCTGGCATTAATCCTCGTTT 40176 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 || | |||||||| |||||| || ||| || || ||||| || ||||| |||||||| Sbjct 40175 CTTCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAA 40116 Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403 || | ||||| ||| ||||| | ||||| | | |||||| || |||||| || Sbjct 40115 TGCAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATC 40056 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 | |||||||| | | | ||| ||||||||||||||||||||| Sbjct 40055 TGCCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 40010 Score = 145 bits (160), Expect = 7e-30 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||||||||||||||| | ||| ||||||||||| || ||||| || ||||| ||| || Sbjct 39914 AATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTG 39855 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCA 14591 ||| ||||||||||||||||| || | | ||| || ||| ||| |||||| ||| | | Sbjct 39854 AAACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAG-AAAATCGTTCAACAA 39796 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 ||||||||| || |||||||| ||| ||||||||||| |||| || ||||||| Sbjct 39795 GATTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGT 39736 Query 14652 ATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693 | || |||| | | | | |||||||| | | ||||| Sbjct 39735 GACGTTCATCATCAGTCAATCTATTCCAATCATCAAGATCCT 39694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482321362133600