Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3604 105 5e-18 seq3666 86.0 5e-12 >seq3604 Length=163256 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 65883 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65942 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 65943 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66002 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || || || | | ||| || ||| | || Sbjct 66003 GATTCCTTCCTTGTCTTGGATTT-TAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66061 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||||||||||||| Sbjct 66062 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 66111 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66170 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 66171 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66230 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || || || | | ||| || ||| | || Sbjct 66231 GATTCCTTCCTTGTCTTGGATTT-TAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66289 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||||||||||||| Sbjct 66290 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 66339 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66398 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 66399 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66458 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || || || | | ||| || ||| | || Sbjct 66459 GATTCCTTCCTTGTCTTGGATTT-TAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66517 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | |||||| ||||||| |||| ||||| ||||| |||||||| || Sbjct 66518 CTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 65655 TCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65714 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||||||||| || || |||| | || ||||| || || Sbjct 65715 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 65774 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || |||| | || || || | | ||| || ||| | || Sbjct 65775 GATTCCTTCCTTGTCTTGGATTT-TAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 65833 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| ||||||| || | ||||| ||||||||||||||| Sbjct 65834 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 >seq3666 Length=820529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||||||||||||||||| | ||| | ||||| Sbjct 197272 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 197213 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || ||| |||| | | |||||||| || | |||||||| || Sbjct 197212 AGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 197153 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | ||| | ||| | ||| ||| | ||||| |||| Sbjct 197152 ATTT-TAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTT 197094 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || ||||| ||||| ||||| || ||||| || || || Sbjct 197093 ACCAGTCAAAGTTTTGACAAAGATCTGCATGTTGAATCT 197055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325414514900