Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq40 129 5e-25 seq3866 100 3e-16 seq3604 98.7 9e-16 >seq40 Length=47542 Score = 129 bits (142), Expect = 5e-25 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| || || ||||| || || || ||||||||||| || || ||| | || ||| || Sbjct 39747 CACGTATTAGCATTTTTTGCTGCTTCAGATGGTATTGTCAATGAAAATCTTGTTGAACGA 39806 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| |||||||| |||||||||||||| ||||| ||||| || |||||| | || Sbjct 39807 TTTTCTCAAGAAGTTCAAGTGACGGAGGCTAGATGTTTTTATGGGTTTCAAATAATGATG 39866 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 || || | ||||||||||||||| || | || ||||| ||| | ||||| Sbjct 39867 GAGAATATACATTCAGAAATGTATAGTTTATTAATTGATACATACATTCAGGAC 39920 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || ||||| ||||||||||| || || || || ||||| ||| ||||||||||| Sbjct 40113 GCATTTGCTGCCGTTGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGATG 40172 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| || | ||||| || | || || ||||| ||| |||| || | || ||| Sbjct 40173 AAGAAACGAGGATTAATGCCAGGTTTAACTTTCAGCAATGAGCTGATTTCTAGAGATGAG 40232 Query 58101 G 58101 | Sbjct 40233 G 40233 >seq3866 Length=782398 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||||||||| || || || ||||| || || |||||| | || || || | Sbjct 247796 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 247855 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||||| |||||| | ||| || || ||||| | || ||||| Sbjct 247856 TCTGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGAT 247915 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || ||| | || ||||| ||||| ||| | ||||| | | | ||| || ||||| Sbjct 247916 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGA-TGGACGTACTTTGTCGGATTA 247974 Query 31369 TAACATTCAAAA 31380 |||||| ||||| Sbjct 247975 TAACATCCAAAA 247986 >seq3604 Length=163256 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || |||||||| ||||| | || || ||| | || Sbjct 65882 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 65823 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | |||| || ||| | ||| ||||||||||| | || || ||||| Sbjct 65822 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65763 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| | || ||||| || ||||| |||||||| | | || | | || || || Sbjct 65762 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGA-TGGCCGTACATTATCTGACTACAA 65704 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || ||||| | ||||| Sbjct 65703 TATTCAGAAAGAATCTACACTTCACTTAGTACT 65671 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || |||||||| ||||| | || || ||| | || Sbjct 66110 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66051 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | |||| || ||| | ||| ||||||||||| | || || ||||| Sbjct 66050 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65991 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| | || ||||| || ||||| |||||||| | | || | | || || || Sbjct 65990 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGA-TGGCCGTACATTATCTGACTACAA 65932 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || ||||| | ||||| Sbjct 65931 TATTCAGAAAGAATCTACACTTCACTTAGTACT 65899 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || |||||||| ||||| | || || ||| | || Sbjct 66338 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66279 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | |||| || ||| | ||| ||||||||||| | || || ||||| Sbjct 66278 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66219 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| | || ||||| || ||||| |||||||| | | || | | || || || Sbjct 66218 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGA-TGGCCGTACATTATCTGACTACAA 66160 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || ||||| | ||||| Sbjct 66159 TATTCAGAAAGAATCTACACTTCACTTAGTACT 66127 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || || || |||||||| |||||||| ||||| | || || ||| | Sbjct 66569 AAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCT 66510 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| | | |||| || ||| | ||| ||||||||||| | || || ||| Sbjct 66509 TCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 66450 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 || ||||| | || ||||| || ||||| |||||||| | | || | | || || Sbjct 66449 CAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGA-TGGCCGTACATTATCTGACTA 66391 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| |||||||| || ||||| | ||||| Sbjct 66390 CAATATTCAGAAAGAATCTACACTTCACTTAGTACT 66355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744000238400