Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq40 158 1e-33 seq2 109 5e-19 >seq40 Length=47542 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 11960 CCATAGAAACATCGTGCCTCTGAACACT-GTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| ||||||| ||||| | |||| | || || | |||||| ||| | | ||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGT-CACTTGAACTTCTTGAGAAAATCGTTCAACAAGATT 39792 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| ||||||||||| || ||||||||||||| || || |||||||| Sbjct 39791 TTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACG 39732 Query 12079 TTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 ||| || | ||| ||| ||| ||||||||| | ||| Sbjct 39731 TTCATCATCAGTCAATCTATTCCAATCATCAAGATC 39696 >seq2 Length=2033018 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||||| ||| | ||||| ||||| || || |||||||| | | ||||||| ||| || Sbjct 1647048 ATATAAATTTGTTGTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGA 1646989 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||||||||||||||||||| || | |||||| | |||||| || |||| | | Sbjct 1646988 AGCAGTAGGCATTGGTGCTAATAACAATGAATTTCTTACACCATGTTTAGCAATTTTTTC 1646929 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAG 37349 ||||| | | ||||| ||||||||| | || ||| |||||||||||| |||| Sbjct 1646928 TTTTAATATTTCCCAATTCCATAAATCACTGGGCTTCACATTCCACATATCATACTGTAA 1646869 Query 37350 AAT 37352 ||| Sbjct 1646868 AAT 1646866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501256628800