Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq40 123 3e-23 seq48 96.9 5e-15 seq2 87.8 2e-12 >seq40 Length=47542 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 ||||||||||| || | |||||||||||| ||||| || || || || |||||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || || |||||||||||||| || | || |||||| | |||||||||| | | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 ||||| || || || || || |||||||| || ||||| || |||||| Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAA 39738 Score = 122 bits (134), Expect = 1e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||| ||| | || ||| || || | || ||||||| || || || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||||| | ||||| |||||| || || || ||||| || || ||||| | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 36300 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 ||| | ||| || ||| || || ||| || ||||||||| |||||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 36404 |||| ||||||||||| ||||| || || ||||||||||| | | ||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 >seq48 Length=686774 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 || ||||| ||||| ||||||||||||||||| || || || | ||||| |||||| || Sbjct 303715 TGAATTATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTT 303774 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 ||| || || ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 303775 TTTGCATTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTGAGA 303830 >seq2 Length=2033018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 ||||| ||||| | ||| |||||||| || | |||||||| ||||| ||||| ||||| Sbjct 1647035 GTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATT 1646976 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 65343 ||||| | || || |||||| | ||| ||||| | ||||| ||||||| || Sbjct 1646975 GGTGCTAATAACAATGAATTTCTTACACC--ATGTTTAGCAATTTTTTCTTTTAATATTT 1646918 Query 65344 CCCAATTCCAAAGATC 65359 |||||||||| | ||| Sbjct 1646917 CCCAATTCCATAAATC 1646902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658139726816800