Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq40 125 1e-23 seq2 111 2e-19 seq48 93.3 6e-14 >seq40 Length=47542 Score = 125 bits (138), Expect = 1e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| || || ||| || || | || ||||||| || || || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | |||||||| | ||||| ||||| || || || ||||| || || ||||| | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 50102 CAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 |||| | ||| || ||| || | || || || ||||||||| |||||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 |||| ||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || || | |||||||||||| ||||| || || || || || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || || |||||||||||||| || | || |||||| | ||||||||||| | | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || || || || || |||||||| || ||||| || |||||| || | Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGT 39731 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCAT 50437 || | || | | |||||||||||| Sbjct 39730 TCATCATCAGTCAATCTATTCCAATCAT 39703 >seq2 Length=2033018 Score = 111 bits (122), Expect = 2e-19 Identities = 155/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 79290 TGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAA 79349 ||||||| || | | ||||| ||| | ||||| |||||||||||||| || ||||| Sbjct 1646793 TGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 1646734 Query 79350 TGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-T 79408 || || ||||| | || || || || | ||| || | | ||| ||| ||| | Sbjct 1646733 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTC-AGGTGAGC 1646675 Query 79409 CAAATGGATAATTTAA-----GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 |||||||| ||| | | ||||||||| |||||||| ||||||| ||||||||| Sbjct 1646674 CAAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACC 1646620 Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496 ||||| | |||||| ||||||||| |||| || Sbjct 1646619 AATAGGACGATGTCTTTTATTAGAAGTTTCTGC 1646587 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 ||||| ||||| | ||||||||||| || | |||||||| ||||| || || ||||| Sbjct 1647035 GTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATT 1646976 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATT 79222 ||||| | || || |||||| | ||| ||| | | ||||| ||||||| || Sbjct 1646975 GGTGCTAATAACAATGAATTTCTTACACC--ATGTTTAGCAATTTTTTCTTTTAATATTT 1646918 Query 79223 CCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 |||||| ||| | |||| || |||||||| | |||||| |||| ||| Sbjct 1646917 CCCAATTCCATAAATCACTGGGCTTCACATTCCACATATCATACTGTAAAAT 1646866 >seq48 Length=686774 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 79663 TGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTC 79722 || ||||||||||| || || |||||||||||||| || || | ||||| |||||| || Sbjct 303715 TGAATTATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTT 303774 Query 79723 TTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||| || || ||||| ||||| || | | || ||||||||||||| ||||| Sbjct 303775 TTTGCATTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTGAGA 303830 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 ||| | ||| | || |||||||| | |||||||||||||| | |||||| || ||||| Sbjct 302941 GTATAAATTTGTTGTGTATGGTTCTATAGATTCATTATTTCCAAGAATTTGTGCTGTTGA 303000 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT-ATGATCTGATTTTAT 79210 ||||| ||||| ||||| | || || |||||||| || | ||| | ||||| Sbjct 303001 AGCCGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTGAGC-AATTTTCG 303059 Query 79211 CTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTG 79268 |||||| ||||| ||||| || || | || |||||||| | |||||| || Sbjct 303060 CTTTTAATTTATCCCAGTCCCATAGGTCGGTAGGCTTTACATTCCACAAATCATACTG 303117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718232706992800