Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq40 154 1e-32 >seq40 Length=47542 Score = 154 bits (170), Expect = 1e-32 Identities = 171/226 (76%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||||||| ||| || || || ||||| ||||| |||||||| ||||||||||| Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAA--GTTAAACCTGGCATTAATCCTCGTTT 40176 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||||| ||||||||| || || || ||||| || ||||| |||||||| Sbjct 40175 CTTCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAA 40116 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 || | ||||| ||| ||||| | ||||| | | |||||| || |||||| || Sbjct 40115 TGCAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATC 40056 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | |||||||| | | | ||| ||||||||||||||||||||| Sbjct 40055 TGCCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 40010 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||||||||||||||| | ||| ||||||||||| || ||||| || ||||| ||| || Sbjct 39914 AATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTG 39855 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCA 14259 ||| |||||||| |||||||| |||| | ||| ||||| ||| |||||| ||| | | Sbjct 39854 AAACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAG-AAAATCGTTCAACAA 39796 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 ||||||||| || |||||||| ||| ||||||||||| |||| || ||||||| Sbjct 39795 GATTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGT 39736 Query 14320 ATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 | || |||| | | | | |||||||| Sbjct 39735 GACGTTCATCATCAGTCAATCTATTCCAATC 39705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703893668000