Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq40 136 4e-27 >seq40 Length=47542 Score = 136 bits (150), Expect = 4e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||||||||||||||| | ||| ||||||||||| || ||||| || || || ||| || Sbjct 39914 AATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTG 39855 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCA 14047 ||| ||||||||||||||||| || | | ||| || || ||| |||||| ||| | | Sbjct 39854 AAACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAG-AAAATCGTTCAACAA 39796 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||| ||||||||||| ||| ||||||||||| |||| || ||||||| Sbjct 39795 GATTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGT 39736 Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | || |||| | | | | |||||||| | | ||||| Sbjct 39735 GACGTTCATCATCAGTCAATCTATTCCAATCATCAAGATCCT 39694 Score = 136 bits (150), Expect = 4e-27 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||||||| ||| || || || ||||| ||||| |||||||| ||||||||||| Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAA--GTTAAACCTGGCATTAATCCTCGTTT 40176 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | |||||||| |||||| || ||| || || ||||| || ||||| |||||||| Sbjct 40175 CTTCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAA 40116 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || | || || ||| ||||| | ||||| | | |||||| || |||||| || Sbjct 40115 TGCAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATC 40056 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 | |||||||| | | | ||| ||||| || ||||| |||||| Sbjct 40055 TGCCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 40010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478564750912800