Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3604 104 2e-17 seq3866 100 2e-16 seq3666 86.0 5e-12 >seq3604 Length=163256 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | |||||| || || |||||||| | || ||||||||||| ||||| || Sbjct 65692 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65751 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||||||||| || | || | ||||| || || ||| |||| || | Sbjct 65752 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 65811 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| | ||| || || || || | || || ||||| || || |||||||||||| Sbjct 65812 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 65871 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 65872 AAAATTTGCATT 65883 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | |||||| || || |||||||| | || ||||||||||| ||||| || Sbjct 65920 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65979 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||||||||| || | || | ||||| || || ||| |||| || | Sbjct 65980 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66039 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| | ||| || || || || | || || ||||| || || |||||||||||| Sbjct 66040 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66099 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 66100 AAAATTTGCATT 66111 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | |||||| || || |||||||| | || ||||||||||| ||||| || Sbjct 66148 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66207 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||||||||| || | || | ||||| || || ||| |||| || | Sbjct 66208 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66267 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| | ||| || || || || | || || ||||| || || |||||||||||| Sbjct 66268 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66327 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 66328 AAAATTTGCATT 66339 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | |||||| || || |||||||| | || ||||||||||| ||||| || Sbjct 66376 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66435 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||||||||||||| || | || | ||||| || || ||| |||| || | Sbjct 66436 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66495 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| | ||| || || || || | || || ||||| || || |||||||||||| Sbjct 66496 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACA 66555 Query 43099 AAAATTTGCATTTT 43112 || |||||||| || Sbjct 66556 AAGATTTGCATCTT 66569 >seq3866 Length=782398 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 ||||||| | || ||||| ||||| |||||| | || || | || |||||||| || | Sbjct 247988 CCTTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 247929 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC 43039 |||| || |||||||||| || | ||||||||| || || ||||||| | Sbjct 247928 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTT 247869 Query 43040 CAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAA 43099 | | ||||| || |||||| || | || || || || || || || |||||||| | Sbjct 247868 CGATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 247809 Query 43100 AAATTTGCATTTT 43112 |||||||||| || Sbjct 247808 AAATTTGCATGTT 247796 >seq3666 Length=820529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 |||||||| || | || || ||||| | ||||| ||||| | ||| ||| |||| Sbjct 197275 AACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197216 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | ||| || |||||||| ||||| ||||||||||| | || | |||||| || || Sbjct 197215 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCT 197156 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 ||| |||| || | ||| | || | ||| || || | || |||||| Sbjct 197155 TGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTT 197096 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || || | |||||| ||||| || ||||| || Sbjct 197095 TTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 197061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381350915273160