Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq40 127 3e-24 seq48 96.9 5e-15 >seq40 Length=47542 Score = 127 bits (140), Expect = 3e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || || | |||||||||||||||||| || || || || || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || || |||||||| ||||| || || || |||||| | ||||||||||| | | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || || || || || |||||||| || ||||| || |||||| | | Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGT 39731 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCAT 42542 || || || ||| |||||||||||| Sbjct 39730 TCATCATCAGTCAATCTATTCCAATCAT 39703 Score = 125 bits (138), Expect = 1e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | || ||| || || | || ||||||| || || || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||||| | ||||| |||||| || || || ||||| || || ||||| | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 42207 CAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGTATCCACTTTTGAGCCCAATCGG 42263 ||| | ||| || ||| || || ||| || ||||||||| |||||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||| ||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 >seq48 Length=686774 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 71746 TGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 71805 || || |||||||| ||||||||||||||||| || || || | ||||| |||||| || Sbjct 303715 TGAATTATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTT 303774 Query 71806 TTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 ||| || || ||||| ||||| || | | | || ||||||||||||| ||||| Sbjct 303775 TTTGCATTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTGAGA 303830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105475255200