Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3666 132 3e-26 seq3604 123 2e-23 seq3866 96.9 3e-15 seq1800 96.9 3e-15 >seq3666 Length=820529 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || |||||||| |||||||| ||| || | | ||||| Sbjct 197503 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197444 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||||||||||||||| ||| || ||||||||||| Sbjct 197443 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197384 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||| ||| |||||| || || || ||||| Sbjct 197383 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197324 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || ||||||||| Sbjct 197323 TTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197291 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || |||||||| |||||||| ||| || | | ||||| Sbjct 197731 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197672 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||||||||||||||| ||| || ||||||||||| Sbjct 197671 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197612 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||| ||| |||||| || || || ||||| Sbjct 197611 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197552 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || ||||||||| Sbjct 197551 TTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197519 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || |||||||| || |||||||| |||||||| ||| || | | ||||| Sbjct 197959 AAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197900 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||||||||||||||| ||| || ||||||||||| Sbjct 197899 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 197840 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||| ||| |||||| || || || ||||| Sbjct 197839 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 197780 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || ||||||||| Sbjct 197779 TTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197747 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || || || || |||||||| ||| || | | ||||| Sbjct 198187 AACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 198128 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| || || || | ||||||||||||||||| ||| || ||||||||||| Sbjct 198127 TCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCT 198068 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| |||| ||| |||||| || || || ||||| Sbjct 198067 TGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTC 198008 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || ||||||||| Sbjct 198007 TTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197975 >seq3604 Length=163256 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || ||||| || || | | | ||||| Sbjct 66358 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCC 66417 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | ||||| || |||||||| ||| |||||||| ||||| Sbjct 66418 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 66477 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || | |||||| || || || |||||||| Sbjct 66478 ATTTTAGCT-TTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTT 66536 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT-----TGAAAATAA 15375 || ||||||||||| ||||| |||||||| || ||||||||| Sbjct 66537 GCCAGTCAGAGTTTTCACAAAGATTTGCATCTTGAGCCTGAAAATAA 66583 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || ||||| || || | | | ||||| Sbjct 65674 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCC 65733 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | ||||| || |||||||| ||| |||||||| ||||| Sbjct 65734 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 65793 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || | |||||| || || || |||||||| Sbjct 65794 ATTTTAGCT-TTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTT 65852 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| |||||||||||||| Sbjct 65853 GCCAGTAAGAGTTTTCACAAAAATTTGCAT 65882 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || ||||| || || | | | ||||| Sbjct 65902 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCC 65961 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | ||||| || |||||||| ||| |||||||| ||||| Sbjct 65962 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 66021 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || | |||||| || || || |||||||| Sbjct 66022 ATTTTAGCT-TTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTT 66080 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| |||||||||||||| Sbjct 66081 GCCAGTAAGAGTTTTCACAAAAATTTGCAT 66110 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| ||||| || || ||||| || || ||||| || || | | | ||||| Sbjct 66130 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCC 66189 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | ||||| || |||||||| ||| |||||||| ||||| Sbjct 66190 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 66249 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || | || | |||||| || || || |||||||| Sbjct 66250 ATTTTAGCT-TTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTT 66308 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| |||||||||||||| Sbjct 66309 GCCAGTAAGAGTTTTCACAAAAATTTGCAT 66338 >seq3866 Length=782398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235 ||||| ||||| ||||| | | | | | ||||| | || ||||| ||| | ||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTC 15294 ||||||||||| ||| ||| || |||||||| || |||||| ||| || ||| |||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCT-TTGACATTTTC 247868 Query 15295 TATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 || || || | || || || | ||| ||||| || ||||| || ||||| || || Sbjct 247867 GATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAA 247808 Query 15355 AATTTGCATATT 15366 ||||||||| || Sbjct 247807 AATTTGCATGTT 247796 >seq1800 Length=381758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| || || ||||| || |||||||| ||||||||||| Sbjct 276147 CCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 276088 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | | ||||| | ||| |||||||| ||||||||||||| || || ||| Sbjct 276087 AGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGA 276028 Query 15257 ATTCCT 15262 || ||| Sbjct 276027 ATACCT 276022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362161455482820