Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2154 93.3 3e-14 seq3666 84.2 1e-11 seq3365 82.4 5e-11 >seq2154 Length=352369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| || | || || || | || ||||| | ||||||||||||||| Sbjct 250686 CACCACCTCTTAAACGAAGTACTAAGTGAAGAGTTGACTCCT---GTATATTGTAATCAG 250742 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | || | | || ||||||||||| ||| ||| |||| | |||| || |||| || Sbjct 250743 ATAATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGAGGTTGTTGATCCGGGG 250802 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | ||||||||||| || || | ||||| ||| ||| | || | | || Sbjct 250803 GAATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATAGAATCTGATGACTCAA 250862 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||| | | || || |||||||| ||||| || ||||||||||| || Sbjct 250863 TCTCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTT 250914 >seq3666 Length=820529 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || || || || ||||| || || | || || | Sbjct 198190 CGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCG 198131 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||||||| ||| || |||||||| ||||| | || || |||||||| Sbjct 198130 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 198071 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| | || | || || |||| ||| Sbjct 198070 TCTTGGATCTTGGCC---TTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTT 198014 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || |||||||| |||||||| Sbjct 198013 ATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq3365 Length=261510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| || | || || || | || ||||| || |||||||||||||||| Sbjct 113886 CACCACCTCTTAAGCGAAGTACTAAGTGAAGAGTTGACTCCTTCTGTATATTGTAATCAG 113827 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | || || | || ||||||||||| ||| ||| || | ||| || || |||| || Sbjct 113826 ATAATGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGGG 113767 Query 33261 GTATGCCT 33268 | |||||| Sbjct 113766 GAATGCCT 113759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318761981889960