Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3604 91.5 1e-13 seq3666 84.2 2e-11 seq2154 82.4 5e-11 >seq3604 Length=163256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| || || |||| ||| |||| |||||||||||||| || || Sbjct 66376 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66435 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| || || ||||| | || | ||||| || ||| ||||| ||| || | Sbjct 66436 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66495 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | || || ||||| || || | ||| |||||| Sbjct 66496 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACA 66555 Query 44111 AATATTTGCATGTCGAGTCT 44130 || |||||||| | ||| || Sbjct 66556 AAGATTTGCATCTTGAGCCT 66575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| || || |||| ||| |||| |||||||||||||| || || Sbjct 65692 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65751 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| || || ||||| | || | ||||| || ||| ||||| ||| || | Sbjct 65752 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 65811 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | || || ||||| || || | ||| |||||| Sbjct 65812 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 65871 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 65872 AAAATTTGCAT 65882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| || || |||| ||| |||| |||||||||||||| || || Sbjct 65920 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65979 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| || || ||||| | || | ||||| || ||| ||||| ||| || | Sbjct 65980 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66039 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | || || ||||| || || | ||| |||||| Sbjct 66040 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66099 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 66100 AAAATTTGCAT 66110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| || || |||| ||| |||| |||||||||||||| || || Sbjct 66148 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66207 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| || || ||||| | || | ||||| || ||| ||||| ||| || | Sbjct 66208 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66267 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | || || ||||| || || | ||| |||||| Sbjct 66268 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66327 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 66328 AAAATTTGCAT 66338 >seq3666 Length=820529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||||||||||| || || ||| | | || | || Sbjct 197275 AACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCT 197216 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||| ||||| ||||| ||||| || || || || | || | |||||| || ||| Sbjct 197215 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCT 197156 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||| || | ||| | ||| | | ||| || || | || || ||| Sbjct 197155 TGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTT 197096 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 ||||| || ||||| || ||||| || ||||||| || ||| Sbjct 197095 TTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTGAATCT 197055 >seq2154 Length=352369 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 43937 TGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAAC 43996 || ||||| ||||| |||| ||| |||| |||||||| || || ||||| || | Sbjct 250727 TGTATATTGTAATCAGATAATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGA 250786 Query 43997 CGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACA 44056 |||| || ||| | || | |||||||||||| | ||||| ||| | | ||| | Sbjct 250787 GGTTGTTGATCCGGGGGAATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATA 250846 Query 44057 GTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATT 44116 | ||||| | ||| | |||| || |||| ||||| || | || || ||||| ||| Sbjct 250847 GAATCTGATGACTCAATCTCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATT 250906 Query 44117 TGCAT 44121 ||||| Sbjct 250907 TGCAT 250911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354760218114960