Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3604 89.7 4e-13 seq3666 86.0 5e-12 >seq3604 Length=163256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || || || |||||||||||||| || || ||||| || ||| | | | ||||| Sbjct 65674 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG--ATAATGTACGGCCATCTT 65731 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||||| || || | || | | |||||| || || | ||||| ||||| Sbjct 65732 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTT 65791 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||| |||||| | ||| ||| || || ||| ||||| || ||||||| Sbjct 65792 GGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTT 65851 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || | ||||| ||||||||||||||| Sbjct 65852 TGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || || || |||||||||||||| || || ||||| || ||| | | | ||||| Sbjct 65902 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG--ATAATGTACGGCCATCTT 65959 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||||| || || | || | | |||||| || || | ||||| ||||| Sbjct 65960 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTT 66019 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||| |||||| | ||| ||| || || ||| ||||| || ||||||| Sbjct 66020 GGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTT 66079 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || | ||||| ||||||||||||||| Sbjct 66080 TGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || || || |||||||||||||| || || ||||| || ||| | | | ||||| Sbjct 66130 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG--ATAATGTACGGCCATCTT 66187 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||||| || || | || | | |||||| || || | ||||| ||||| Sbjct 66188 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTT 66247 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||| |||||| | ||| ||| || || ||| ||||| || ||||||| Sbjct 66248 GGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTT 66307 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || | ||||| ||||||||||||||| Sbjct 66308 TGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 || || || |||||||||||||| || || ||||| || ||| | | | ||||| Sbjct 66358 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG--ATAATGTACGGCCATCTT 66415 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 |||||||||| || || | || | | |||||| || || | ||||| ||||| Sbjct 66416 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTT 66475 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||| |||||| | ||| ||| || || ||| ||||| || ||||||| Sbjct 66476 GGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTT 66535 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| |||| ||||| ||||| |||||||| || Sbjct 66536 TGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 >seq3666 Length=820529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | ||||||||| || || |||||||||||||| |||||||| ||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG--G 197233 Query 20042 ATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | ||||| | ||| || || ||| | || | | ||||||||| | Sbjct 197232 AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTG 197173 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| ||||| ||| || | ||| ||||| | || Sbjct 197172 GGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAA 197113 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAACT 20217 ||||| || || ||||| || ||||| ||||||||||| || ||||| || || || Sbjct 197112 CTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTGAATCT 197055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419566642849620