Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq40 140 3e-28 >seq40 Length=47542 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACAT 13449 |||| | |||| ||||| || ||| ||| || ||||| || ||||| |||||||| Sbjct 39944 AAATTATTAATACTTTTCTTTTGGGTCCTGAATGTATGTATCAATTAATAAACTATACAT 39885 Query 13450 TTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATAC 13509 ||||||||| ||||| |||||| |||||| || |||||||||||||||||||| | || Sbjct 39884 TTCTGAATGTATATTCTCCATCATTATTTGAAACCCATAAAAACATCTAGCCTCCGTCAC 39825 Query 13510 CTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 |||||||| ||| |||||| ||| | | ||||| || || || || || ||||| Sbjct 39824 TTGAACTTCTTGAG-AAAATCGTTCAACAAGATTTTCATTGACAATACCATCTGAAGCAG 39766 Query 13569 CaaaaaaaGCAAGTATGTG 13587 ||||||| || | || ||| Sbjct 39765 CAAAAAATGCTAATACGTG 39747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961284556040