Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3263 159 8e-34 seq3604 150 4e-31 seq3666 138 3e-27 seq40 136 9e-27 seq2154 127 5e-24 seq3866 107 4e-18 seq3365 87.8 4e-12 >seq3263 Length=267844 Score = 159 bits (176), Expect = 8e-34 Identities = 217/300 (72%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 238590 CTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGA 238649 || |||||||| || || ||||| |||||| |||||| ||||| ||||| | || Sbjct 108159 CTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCACGGTTTCCTTCGC 108218 Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGAT-CTCCAAAGGAAGCTCTTAGATA 238708 ||||| ||||||||||||||||| ||||||||| ||| ||||| | ||| || | Sbjct 108219 ATGTACTGGGCTAAAAAGATACTGGAATGGACT-GATACTCCAGATAGAGCACTGGCCGA 108277 Query 238709 TAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 | |||||||| || || || || | |||||| || || | || | || || Sbjct 108278 TGCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAGTGGTTTTGTTGG 108337 Query 238769 TTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGG 238828 |||||||||||||||||||| | || ||| || ||| || ||| || ||||| Sbjct 108338 ATGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAGAGAAATTTTTGG 108397 Query 238829 AAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTTAT 238888 |||| |||| || ||||| ||||||||| |||| ||| ||||| |||||||||| || Sbjct 108398 AAAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTTGACATAAATGCTTTCAT 108457 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 237973 AAGTGGTATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATA 238032 ||||| | ||||||| || || || || ||||||||||||||||||| ||| ||| | | Sbjct 107263 AAGTGCCAGTTATACAGGTAGATGCCCATAATATTGTACCTTGTTGGGTAGCCTCTGACA 107322 Query 238033 AACAAGAATACGGTGCTAGAACATTACGTAAGAAAATAAAT 238073 |||||||||| ||| |||||| |||| || ||||| ||| Sbjct 107323 AACAAGAATATTCTGCAAGAACAATACGAAACAAAATCAAT 107363 >seq3604 Length=163256 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||||| || | ||||||||||||||||||||| |||||| Sbjct 65653 ATTCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 65712 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | ||||||||| || || || | | |||||| || || Sbjct 65713 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 65772 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || || || ||||| |||||||| | | || || |||| Sbjct 65773 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 65832 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || |||||||| ||||| ||||| || |||||| Sbjct 65833 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||||| || | ||||||||||||||||||||| |||||| Sbjct 65881 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 65940 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | ||||||||| || || || | | |||||| || || Sbjct 65941 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66000 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || || || ||||| |||||||| | | || || |||| Sbjct 66001 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66060 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || |||||||| ||||| ||||| || |||||| Sbjct 66061 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||||| || | ||||||||||||||||||||| |||||| Sbjct 66109 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 66168 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | ||||||||| || || || | | |||||| || || Sbjct 66169 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66228 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || || || ||||| |||||||| | | || || |||| Sbjct 66229 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66288 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || |||||||| ||||| ||||| || |||||| Sbjct 66289 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||||| || | ||||||||||||||||||||| |||||| Sbjct 66337 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 66396 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | || ||||| | ||||||||| || || || | | |||||| || || Sbjct 66397 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66456 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || || || ||||| |||||||| | | || || |||| Sbjct 66457 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66516 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | || || || || ||||| || ||||| ||||| || ||||| ||| Sbjct 66517 ACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTTG 66570 >seq3666 Length=820529 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| || || || | |||||||| ||||| ||||| Sbjct 197260 GTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCG 197201 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||||||| || || || ||||| || || || || || ||||| Sbjct 197200 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATTTTAGCTTTA 197141 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| | || || || | || ||||| |||||||| | ||| Sbjct 197140 ACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTACCAGTCAAAGTT 197081 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| ||| Sbjct 197080 TTGACAAAGATCTGCATGTTG 197060 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| || || || | |||||||| ||||| ||||| Sbjct 197488 GTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCG 197429 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||| || || || || |||||||| || || ||||| || || Sbjct 197428 GCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTA 197369 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| | |||||| || | ||| || ||||| || || || || Sbjct 197368 ACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTC 197309 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 197308 TTTACGAAGATTTGCAT 197292 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| || || || | |||||||| ||||| ||||| Sbjct 197716 GTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCG 197657 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||| || || || || |||||||| || || ||||| || || Sbjct 197656 GCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTA 197597 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| | |||||| || | ||| || ||||| || || || || Sbjct 197596 ACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTC 197537 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 197536 TTTACGAAGATTTGCAT 197520 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| || || || | |||||||| ||||| ||||| Sbjct 197944 GTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCG 197885 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||||| || || || || |||||||| || || ||||| || || Sbjct 197884 GCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTA 197825 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| | |||||| || | ||| || ||||| || || || || Sbjct 197824 ACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTC 197765 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 197764 TTTACGAAGATTTGCAT 197748 >seq40 Length=47542 Score = 136 bits (150), Expect = 9e-27 Identities = 147/194 (76%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 269043 TATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAAT 269102 ||||| | |||| ||| ||| ||||| | |||||| | || ||||||||||| | Sbjct 40012 TATTTAATGCTATTGAAACCATGCCGTGTGTAAAAAAAAAGGCAGATTGGGCTCTGAAGT 40071 Query 269103 GGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAG 269159 |||||| |||||| ||| ||| || ||||| |||||||| ||||| || || |||| Sbjct 40072 GGATAAGCGATAGTAAAGCGACTTTTGGTGAAAGATTAGTTGCATTTGCTGCCGTTGAAG 40131 Query 269160 GTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGC 269219 ||||||| || || || |||||| || | |||||| |||||||| |||| | |||| Sbjct 40132 GTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGATGAAGAAACGAGGATTAATGC 40191 Query 269220 CAGGATTAACTTTC 269233 |||| ||||||||| Sbjct 40192 CAGGTTTAACTTTC 40205 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 |||||||| | | | || |||||||| | | |||||||| || || |||||||| Sbjct 39738 TTTATATCCCACGTATTAGCATTTTTTGCTGCTTCAGATGGTATTGTCAATGAAAATCTT 39797 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || || || | |||||| || || | | || || ||||||||||| || || || Sbjct 39798 GTTGAACGATTTTCTCAAGAAGTTCAAGTGACGGAGGCTAGATGTTTTTATGGGTTTCAA 39857 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||| || || ||||| |||||||| ||||| ||| ||||||| ||||| || || Sbjct 39858 ATAATGATGGAGAATATACATTCAGAAATGTATAGTTTATTAATTGATACATACAT 39913 >seq2154 Length=352369 Score = 127 bits (140), Expect = 5e-24 Identities = 167/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | |||||||| || | || || || ||| ||||| || |||||| Sbjct 250688 CCACCTCTTAAACGAAGTACTAAGTGAAGAGTTGACTC---CTGTATATTGTAATCAGAT 250744 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | ||| || |||||||||||||| |||||||| || || Sbjct 250745 AATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGAGGTTGTTGATCCGGGGGA 250804 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| | || || | ||||| |||||| | | ||| | || | | Sbjct 250805 ATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATAGAATCTGATGACTCAATC 250864 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || | |||||||| ||||| ||||| ||||| || ||||| ||| Sbjct 250865 TCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTTG 250915 >seq3866 Length=782398 Score = 107 bits (118), Expect = 4e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || ||||| || || | ||| | || ||||| || || || || || || || Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | |||||||| || || || ||||||||||| ||||| || ||||| |||||||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | || || || || ||||| || || || ||||| || ||||| ||||| || || Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 104552 ATCTGCATTTTG 104563 || ||||| ||| Sbjct 247806 ATTTGCATGTTG 247795 >seq3365 Length=261510 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | |||||||| || | || || || ||||| ||||| || |||||| Sbjct 113884 CCACCTCTTAAGCGAAGTACTAAGTGAAGAGTTGACTCCTTCTGTATATTGTAATCAGAT 113825 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | ||| || ||||||||||| || | ||||||||| || || Sbjct 113824 AATGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGGGGA 113765 Query 104453 ATTCCT 104458 || ||| Sbjct 113764 ATGCCT 113759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151339095786160