Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2053 125 9e-24 seq1102 91.5 2e-13 seq35 82.4 9e-11 >seq2053 Length=1098109 Score = 125 bits (138), Expect = 9e-24 Identities = 156/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 164497 AAATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAA 164556 || ||||| || ||||| | ||||| ||||| || ||| || ||||| |||||| Sbjct 895288 AACTTAGGGTGCAAACACGTCAAAGGTATTTTGCTATTTGGTCCACCTGGAACTGGTAAA 895229 Query 164557 ACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTT 164613 |||||||||||| || |||| ||| | || ||| || || || |||||||||| Sbjct 895228 ACATTAATGGCTAGACAAATTGGACAAA-TGTTGAATGCACGTGAACC--TAAAATTGTT 895172 Query 164614 AATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTG 164673 ||||| ||| || | ||| |||||||||| ||||| || ||||| ||| | |||| || Sbjct 895171 AATGGCCCTCAAATTTTGGACAAATATGTTGGTGAATCTGAAGCAAATATAAGAAGATTA 895112 Query 164674 TTTCAGGAGGCTGAAGAAGAACAAAAGAAAG 164704 || || |||||||||||| |||| |||| Sbjct 895111 TTCGCAGATGCTGAAGAAGAAGAAAAAAAAG 895081 >seq1102 Length=1235416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 7224 ATCACCTTCTTCACGATGATTAAATCCTAATCGATT-TAAATTAGATTTTGATCCATAAG 7282 || ||||||||| |||| ||| ||| ||| || | ||||| || || | | | Sbjct 520870 ATTACCTTCTTCGCGATTGGTAAGTCC-AATAGAGTCTAAATATGAACGTGTGCTGTTCG 520928 Query 7283 CATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGA 7342 ||||||||| | |||| ||| | || || | | ||||||||| || ||||||| | Sbjct 520929 CATCCCAAACTTTTACATCTTTATCAGACAATTCTTTAGAATTTGTCGAGCCTTTAATAA 520988 Query 7343 ACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAA 7394 ||||||| | ||||||||| | ||||||||||||| |||||||| || || Sbjct 520989 ACCATAATAATTCTTCTACGACACCACGCCAAAACACCCTTTTTGTTGTCAA 521040 >seq35 Length=46307 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||||||| |||| |||||||| |||||||| || ||||||||| |||||||| || Sbjct 18279 AATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTCAAAAAGGAACATGTGGAAT 18338 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 || | || |||||||||||||| ||| || || || || ||| ||||||| Sbjct 18339 TCAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 18398 Query 19474 TAACCCACATGCTTTTCC 19491 || || || ||| |||| Sbjct 18399 AAATCCTCACGCTATTCC 18416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595842057432000