Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq993 113 2e-20 >seq993 Length=1293034 Score = 113 bits (124), Expect = 2e-20 Identities = 171/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 3902 GGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTG 3961 ||||| || ||||| || ||||||| | | |||||||| ||||||||| ||||||| Sbjct 638753 GGGTTTTCTGTTGATGGGCAAGAAAGTTTCCAAGAAATTTTATCGAAACGATTGTATTTA 638812 Query 3962 TGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTT 4021 |||||| ||| ||| |||| || | | | |||||||||| | | ||| || Sbjct 638813 TGTCAAGCTTTGGCTGCTTTGAGTATTCTTCAACCAGGTGGTCATTTTATGTGTAAACTT 638872 Query 4022 TTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA-TAGATCTTTTAA 4080 || |||||||| || ||||||||||||||| ||| | |||| ||| |||||| Sbjct 638873 TTTGATATATTCACTGAATTTAGTGCTGGTTTATTGTTCCTTTTGTACCAGA-GTTTTAA 638931 Query 4081 TCGTATTTGTATTTTCAAACCA--CATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 | || |||||| ||||||| || | |||| || || ||||||||||| || || Sbjct 638932 ACAAATAAGTATTTACAAACCAGTCACTAGTCGC--CCTGCAAATTCTGAAAGGTAATT 638988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276540050602060