Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2774 114 7e-21 seq2131 111 8e-20 seq1367 111 8e-20 seq982 111 8e-20 seq1431 105 3e-18 >seq2774 Length=298678 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 281686 AATAAAAAA--ATTTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 281743 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 281744 GACGCTCTAACCAACTGAGCTAATGGGCC 281772 Score = 111 bits (122), Expect = 8e-20 Identities = 88/103 (85%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||||| || | |||||||| || | ||||||||| |||||||||| ||||||| Sbjct 280603 AAATATTGA-TGCATAAAAAA--AATTGATGGCCCATGGGGGGATCGAACCCACGACCTT 280547 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 280546 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 280504 >seq2131 Length=356446 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 178127 ATCAAAAAAAATTTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACG 178186 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 178187 ACGCTCTAACCAACTGAGCTAATGGGCC 178214 >seq1367 Length=430594 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 43136 TTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 43195 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 43196 CTGAGCTAATGGGCC 43210 >seq982 Length=480291 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 283557 AAAAAATGTA--TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 283614 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 283615 GCTCTAACCAACTGAGCTAATGGGCCG 283641 >seq1431 Length=429602 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 58327 TTGGCTCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 58268 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 58267 CTGAGCTAATGGGCC 58253 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 58451 TTGGCTCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 58510 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 58511 CTGAGCTAATGGGCC 58525 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478388565520