Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3866 114 1e-20 seq3666 109 5e-19 seq3604 98.7 9e-16 >seq3866 Length=782398 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | ||||||||| || ||| ||| || ||||| || ||| | |||| Sbjct 247988 CCTTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 247929 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | || | ||| ||||| || || ||||||||||| || | |||||| || ||||| Sbjct 247928 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTT 247869 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| |||||||| ||||| |||| |||||||| || || ||||| |||||||| | Sbjct 247868 CGATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 247809 Query 94998 AGATCTGCATG 95008 | || |||||| Sbjct 247808 AAATTTGCATG 247798 >seq3666 Length=820529 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | |||||||| ||||| | ||| || ||| | ||||| | Sbjct 197278 CGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG--AAAGTGTGCGTC 197221 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || || || || |||||| ||||||| || | || |||||||| || |||||||| | Sbjct 197220 CGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCT 197161 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| || || || | | | |||| || || || | |||| Sbjct 197160 TGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGA 197101 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| ||||| | |||||| ||||||||||||||| Sbjct 197100 TAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 Score = 104 bits (114), Expect = 2e-17 Identities = 172/245 (70%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 94766 TTAAAATT-TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824 |||||||| || |||| |||| | |||||||||||||| | |||||||||||| || Sbjct 198218 TTAAAATTATTGTGCTCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTG 198159 Query 94825 CACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 | ||| || ||| | ||||| | || || || || |||||| ||||||| || Sbjct 198158 GATGTTGTAGTCGG--AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAA 198101 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 | ||| || ||||| || |||||||||||||| | || || ||||| || | | Sbjct 198100 CGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATG 198041 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 | |||| || || || | || ||||| ||||| || || || || || ||||| Sbjct 198040 GAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATT 197981 Query 95003 TGCAT 95007 ||||| Sbjct 197980 TGCAT 197976 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||| ||||| | ||| || ||| | ||||| | Sbjct 197506 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG--AAAGTGTGCGTC 197449 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || || || || |||||| ||||||| || | ||| || ||||| || |||||||||| Sbjct 197448 CGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTT 197389 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || | | | |||| || || || | || | Sbjct 197388 TGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTA 197329 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || || || || || ||||| ||||| Sbjct 197328 TGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||| ||||| | ||| || ||| | ||||| | Sbjct 197734 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG--AAAGTGTGCGTC 197677 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || || || || |||||| ||||||| || | ||| || ||||| || |||||||||| Sbjct 197676 CGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTT 197617 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || | | | |||| || || || | || | Sbjct 197616 TGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTA 197557 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || || || || || ||||| ||||| Sbjct 197556 TGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||| ||||| | ||| || ||| | ||||| | Sbjct 197962 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG--AAAGTGTGCGTC 197905 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || || || || |||||| ||||||| || | ||| || ||||| || |||||||||| Sbjct 197904 CGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTT 197845 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || | | | |||| || || || | || | Sbjct 197844 TGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTA 197785 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || || || || || ||||| ||||| Sbjct 197784 TGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 >seq3604 Length=163256 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | || | || ||||| | |||||||| || || | Sbjct 65871 AAAAATTTGCATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAAT 65930 Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | || || | ||| |||| ||||||||| | ||||| |||| | Sbjct 65931 ATTGTAGTCAGATAAT-GTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCT 65989 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| || || ||||| ||||| | ||||| || || || | | || || Sbjct 65990 GTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGT 66049 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| |||||||||||||||||||| || |||| Sbjct 66050 CCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCA 66109 Query 95007 T 95007 | Sbjct 66110 T 66110 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | || | || ||||| | |||||||| || || | Sbjct 66099 AAAAATTTGCATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAAT 66158 Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | || || | ||| |||| ||||||||| | ||||| |||| | Sbjct 66159 ATTGTAGTCAGATAAT-GTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCT 66217 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| || || ||||| ||||| | ||||| || || || | | || || Sbjct 66218 GTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGT 66277 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| |||||||||||||||||||| || |||| Sbjct 66278 CCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCA 66337 Query 95007 T 95007 | Sbjct 66338 T 66338 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | || | || ||||| | |||||||| || || | Sbjct 66327 AAAAATTTGCATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAAT 66386 Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | || || | ||| |||| ||||||||| | ||||| |||| | Sbjct 66387 ATTGTAGTCAGATAAT-GTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCT 66445 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| || || ||||| ||||| | ||||| || || || | | || || Sbjct 66446 GTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGT 66505 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | ||||||||||| ||||| ||||||||||||||||| |||| Sbjct 66506 CCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCA 66565 Query 95007 T 95007 | Sbjct 66566 T 66566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 94765 TTTAA-AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTT 94823 ||||| || ||| || ||| || | | || | || ||||| | |||||||| || | Sbjct 65639 TTTAAGAAATTTGCATTCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCT 65698 Query 94824 GCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAAT 94882 | | || || || | | || || | ||| |||| ||||||||| | ||||| ||| Sbjct 65699 GAATATTGTAGTCAGATAAT-GTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAAT 65757 Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 | || || ||||| || || ||||| ||||| | ||||| || || || | | | Sbjct 65758 CGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATA 65817 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 | ||| | || || || | ||||||||||| |||||||||||||||||||| || Sbjct 65818 GAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATT 65877 Query 95003 TGCAT 95007 ||||| Sbjct 65878 TGCAT 65882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448268673367200