Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2090 201 2e-47 seq792 159 5e-35 seq2344 152 8e-33 seq1207 131 3e-26 >seq2090 Length=371202 Score = 201 bits (222), Expect = 2e-47 Identities = 207/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| | | || || ||||||||||||||||||||||| || || Sbjct 352642 GCCAAACGTCATCGCAAAGTGTTGCGTGACAACATCCAAGGAATCACCAAGCCCGCCATT 352701 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | ||||||||||| || || |||||| |||| || || |||| ||||||| | Sbjct 352702 CGTCGTTTAGCTCGTCGTGGAGGTGTGAAGCGTATCTCCGGTCTGATCTACGAAGAGACT 352761 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||| | | | ||| || | || || || ||||||||| Sbjct 352762 CGTGGAGTGTTGAAGGTGTTCTTGGAAAACGTAATTCGGGACGCCGTCACATATACCGAG 352821 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| |||| || || |||| || |||||| Sbjct 352822 CACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTTTACGCTCTGAAGCGCCAAGGC 352881 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| | |||||||||||||| ||||| ||| Sbjct 352882 CGTACGCTTTATGGTTTTGGAGGTTAAACTT 352912 Score = 196 bits (216), Expect = 8e-46 Identities = 206/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| | | || || ||||||||||||||||| ||||| || || Sbjct 355559 GCCAAACGTCATCGCAAAGTGTTGCGTGACAACATCCAAGGAATCACTAAGCCCGCCATT 355500 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | ||||||||||| || || |||||| |||| || || |||| ||||||| | Sbjct 355499 CGTCGTTTAGCTCGTCGTGGAGGTGTGAAGCGTATCTCCGGTCTGATCTACGAAGAGACT 355440 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | ||| | | | ||| || | || || || ||||||||| Sbjct 355439 CGTGGAGTGTTGAAGGTGTTCTTGGAAAACGTAATTCGGGACGCCGTCACATATACCGAG 355380 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| |||| || || |||| || |||||| Sbjct 355379 CACGCCAAGAGGAAGACCGTCACAGCCATGGACGTCGTTTACGCTCTGAAGCGCCAAGGC 355320 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 |||| | |||||||||||||| ||||| ||| Sbjct 355319 CGTACGCTTTATGGTTTTGGAGGTTAAACTT 355289 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || |||||||||||||| |||||||| || || || Sbjct 2948 CGCCAAACGTCATCGCAAAGTGTTACGTGATAACATCCAAGGTATCACCAAACCTGCCAT 3007 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | || || ||||||||||| || ||| |||| || || | |||||||| | Sbjct 3008 TCGTCGTTTAGCCCGCCGTGGTGGAGTGAAACGTATCTCCGGTCTGATTTATGAAGAAAC 3067 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 ||| | || ||||| | || || | | ||| |||| || | | || || || || | Sbjct 3068 TCGCGGCGTGTTGAAAGTGTTTCTGGAAAACGTAATCCGGGACGCCGTTACA-TACACGG 3126 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | ||||| |||||| |||||||| ||||||| ||| |||||||||||| Sbjct 3127 AGCACGCCAAAAGGAAGACCGTCACCGCCATGGATGTCGTCTACGCACTGAAACGTCAAG 3186 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || |||||||| ||||| Sbjct 3187 GTCGTACTTTGTACGGTTTTGGTGGTTAA 3215 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || ||||||||||| |||||||||||||| || || Sbjct 66041 CGCCAAACGTCATCGCAAAGTGTTGCGTGATAACATCCAGGGAATCACCAAGCCTGCCAT 66100 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | || || ||||| ||||| || ||| |||| || || |||| ||||| | Sbjct 66101 TCGTCGTTTAGCCCGCCGTGGAGGAGTGAAACGTATCTCCGGTCTGATCTACGAAGAAAC 66160 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 |||| || ||||| | || || | | ||| |||| || | | || || || || | Sbjct 66161 CCGTGGAGTGTTGAAAGTGTTTCTGGAAAACGTAATCCGGGACGCCGTTACA-TACACAG 66219 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | ||||| |||||| ||||||| |||| || || | ||||| |||| Sbjct 66220 AGCACGCCAAAAGGAAGACCGTCACCGCCATGGACGTCGTATACGCTCTCAAACGACAAG 66279 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| ||| ||||| Sbjct 66280 GCCGTACTCTGTATGGTTTCGGAGGTTAA 66308 >seq792 Length=12188 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | || || ||||||||||| |||||||||||||| || || Sbjct 12139 CGCCAAGCGTCATCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAGCCTGCCAT 12080 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||||| || ||||| || || ||| | || || ||| | || ||||| | Sbjct 12079 CCGTCGGTTAGCTCGCCGAGGTGGTGTTAAACGTATTTCCGGTTTGATTTACGAAGAAAC 12020 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| |||| | ||||| | | ||| |||| || || || ||| || || Sbjct 12019 CCGTGGTGTTCTGAAAGTGTTCCTGGAAAACGTGATCCGCGACGCAGTCACCTACACTGA 11960 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| | ||||| | || || || | ||||| ||||| Sbjct 11959 GCACGCCAAGAGGAAGACCGTCACCGCTATGGACGTTGTATACGCTCTTAAACGACAAGG 11900 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| | ||| Sbjct 11899 CCGTACTCTGTACGGTTTCGGAGGATAA 11872 Score = 141 bits (156), Expect = 1e-29 Identities = 192/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | || || ||||||||||| || || |||||||| || || Sbjct 2609 CGCCAAGCGTCATCGTAAAGTGCTCCGTGATAACATCCAGGGTATTACCAAGCCTGCCAT 2668 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | ||||| || ||||| || || ||| | || || || | || ||||||| Sbjct 2669 CCGTCGGTTAGCTCGCCGAGGTGGTGTAAAACGTATTTCCGGTTTAATTTACGAAGAGAC 2728 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| | ||||| | | ||| |||| ||| || || || || || Sbjct 2729 CCGAGGAGTCCTGAAAGTGTTCCTGGAAAACGTGATCCGTGACGCAGTCACATACACAGA 2788 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | ||||| || || Sbjct 2789 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTATACGCTCTTAAACGACAGGG 2848 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 2849 CCGTACTCTGTACGGTTTCGGAGGTTAA 2876 >seq2344 Length=2046 Score = 152 bits (168), Expect = 8e-33 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||| | | | || || ||||||||||| |||||||||||||| || || Sbjct 1521 GCTAAACGTCATTGAAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAGCCTGCCATT 1462 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||| || || || ||| | ||||| ||| |||| ||||||| Sbjct 1461 CGTCGGTTGGCCCGCCGTGGCGGTGTTAAACGTATTTCTGGTTTGATCTACGAAGAGACC 1402 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | || | ||| | | | ||| || | ||| || || || |||||| Sbjct 1401 CGTGGAGTCCTCAAAGTTTTCTTGGAAAACGTGATTCGTGACGCCGTCACATACACCGAG 1342 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || || ||||| ||||||| |||| || ||| |||| || |||||| Sbjct 1341 CACGCCAAGAGGAAAACCGTCACTGCCATGGACGTCGTATACGCACTGAAGCGACAAGGC 1282 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||| ||| | ||| Sbjct 1281 CGTACCCTGTATGGTTTCGGAGGCTAA 1255 >seq1207 Length=1223737 Score = 131 bits (144), Expect = 3e-26 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | || || || |||||||||||||| || ||||| || ||| Sbjct 780611 GCAAAACGGCATCGTAAAGTGCTCCGGGACAACATCCAAGGAATTACTAAGCCTGCCATC 780552 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| || || ||||| || || | || |||||| |||| |||||| Sbjct 780551 CGTCGTTTGGCTCGCCGAGGAGGAGTGAAACGGATTTCCGGATTGATCTACTAAGAGACC 780492 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | || || | | ||| |||| |||||| || |||||||| Sbjct 780491 CGTGGAGTGTTGAAGGTTTTTCTGGAAAACGTGATCCGTGATGCAGTCACTTATACCGAA 780432 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||| || | ||||| ||||| ||| ||| Sbjct 780431 CACGCCAAGAGGAAGACCGTCACAGCCAGGGA 780400 Score = 87.8 bits (96), Expect = 3e-13 Identities = 159/237 (67%), Gaps = 23/237 (10%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || ||||||||||| |||||||||||||| || Sbjct 764962 GCCAAACGTCATCGAAAAGTGTTGCGTGATAACATCCAGGGAATCACCAAGCCCGC---- 764907 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG----TCTCTGGATTGGTCTATGAAGA 16548 ||||| ||||| || ||| |||| || ||| |||| ||||| Sbjct 764906 ---------------CGTGGAGGAGTGAAACGTAGGTATCTCCGGTTTGATCTACGAAGA 764862 Query 16549 GATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC 16608 | || | ||| ||||| | ||||| | | ||| |||| ||| || || || || Sbjct 764861 AACCCGCGGTGTGTTGAAAGTGTTCCTGGAAAACGTGATCCGTGACGCCGTCACATACAC 764802 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACG 16665 ||||||||| || | ||||| || ||| ||||||| |||| || || ||||||| Sbjct 764801 CGAGCACGCCAAGAGGAAGACGGTTACCGCCATGGACGTCGTATACGCGCTGAAACG 764745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071524485860