Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq3868 111 2e-20 seq3840 104 3e-18 seq628 98.7 1e-16 seq244 98.7 1e-16 seq104 98.7 1e-16 seq32 95.1 2e-15 seq24 95.1 2e-15 seq830 87.8 2e-13 seq1316 82.4 1e-11 >seq3868 Length=75686 Score = 111 bits (122), Expect = 2e-20 Identities = 506/782 (65%), Gaps = 49/782 (6%) Strand=Plus/Plus Query 12200 ACCATCTGGTTCTTGATGTTTGATGATATTCTTTCATCAAAGAATGCCATAGCTACAGTT 12259 |||||||| | ||| | | | || ||| ||||||||||| | | || ||| Sbjct 30091 ACCATCTGATGCTTTACCTCTAGTGGTATAGAATCATCAAAGAAAGATAATGCAGCAGCC 30150 Query 12260 TCTGGGTTTAAATACCACAAATGCATGCTAAATTTTTTCAATGCCACTTCAGATATTTTA 12319 ||| |||||||||||||||| ||| ||||||| | || ||| |||||||| Sbjct 30151 TCTTCAGTTAAATACCACAAATGGTTGCATAATTTTTGAATTGATACTCTAGATATTTC- 30209 Query 12320 GCATCTGTCGATTGATAATCA-ATAAGT-----TCCTTTAAAAATGATAAATCATTATTT 12373 ||| || | | | ||| |||| | || |||| |||| ||| || | |||| Sbjct 30210 ---TCTATCAAATACT--TCATATAATTGCATATCTTTTATAAATTGTAAGTCTTGATTT 30264 Query 12374 GGAGCTTCAGATGCGAGAGGACAAGTGAACCATGCTTTGATATACACTGTAGCAATAAAA 12433 || | | | || | |||||||| ||||| ||||||| || | | || ||||||| Sbjct 30265 GGGGACTTATTTGGCAATGGACAAGTAAACCAAGCTTTGACGTAAAATTTAATAATAAAA 30324 Query 12434 ACACAAATTTCAGAAACGGATTTGATTAATTTCACCGTCATTTTGAATTGTTTACGAAAT 12493 |||||||||||| | | ||| || | | | || ||| |||| | | ||| Sbjct 30325 ACACAAATTTCACCGATTGCTTTTTTTGTTAAGTCGGAAATATTGTATTGGCTTCTAAAC 30384 Query 12494 AAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTAGCGTGGTGGAATGCACCC 12553 ||||||||||||| ||| || ||| ||||||||||| || || || | || || Sbjct 30385 AAAAATATTTTTAAGCAATAAATTGCTCGTGCCATCCACCGGGCTTGATGCATGGCTCCG 30444 Query 12554 GG--------TTTTCGAAATTTTACTTAACTGCAGGGAACTTTA---CCAATAAATATCT 12602 || |||| ||||||| || | || || ||| |||||||| || Sbjct 30445 GGAGGATGCATTTT---AATTTTATTT---TCCA---AA--TTACCGCCAATAAAAATAA 30493 Query 12603 GAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTTGAATC-AAGTTGCTTT 12661 | | |||||||| ||| || || ||| | | || || || | || || || |||| Sbjct 30494 ATATTAACTCCAAAAATTCACGATAATCTCCACGAGGCTGTTTAGTTTCTAATTTACTTT 30553 Query 12662 TGGATAAAGTGATTAATGTCATCAATATGATTTTGTATTTTTTCTTGCACATAC--GAAT 12719 | | ||| | ||| || || || ||||| || | ||||| | ||| Sbjct 30554 T-AACAAAATTCAGAATATCTTCTTTAACATTTTCTAAAGCCAC-GCCACATGCCTGAA- 30610 Query 12720 CTTCAATCCCATTAGAATATTGACTTATATC-AATTTCGCCCCAGCTCTCTCGAAATCTT 12778 ||||||| || | ||||| | ||||| ||||| || || | | |||| || Sbjct 30611 CTTCAATTCCGATGTTATATTTGTTAATATCTAATTTATACCATTCT-TTTTGAAAATTT 30669 Query 12779 TTAAATAAAGGTACATCAGGACCTGAGGT---TGTAGGTATTTTAAGTTCAAAAACACCC 12835 |||||||| || | | | || | ||| || | |||||||||| |||||||||| Sbjct 30670 TTAAATAATGGAATAGCTGGGCTTGATGTAACTTCTGGTATTTTAATTTCAAAAACAGAT 30729 Query 12836 CTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGC 12895 || | || || ||| | || |||||||| ||||| | ||| ||||| ||||| | || Sbjct 30730 CTCAAAATTAGCTCATAAATATGATGCCTACAAGGAAGATATAATAGGTTTTTACCGAGT 30789 Query 12896 AACCGTTCCAGTGAAACTGCA-GCTCC-TTTACTTGATCCTAGATTTGCAGCAGTAGTAT 12953 ||| || | ||| | || ||||| |||| | |||| ||| | |||||| |||| Sbjct 30790 TTTTGTT-CAATTAAAATACATGCTCCATTTAAGCG-TCCTGTATTGGAAGCAGTTGTAT 30847 Query 12954 CA 12955 || Sbjct 30848 CA 30849 >seq3840 Length=89653 Score = 104 bits (114), Expect = 3e-18 Identities = 131/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535 || |||| | | ||||||| | ||| ||||| ||||||||||||||||||||||||||| Sbjct 30353 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 30294 Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592 || ||| ||||||| ||||| | |||||| | | | ||| | || || |||| Sbjct 30293 GCCATGTGATATGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 30235 Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646 ||||||| || |||| |||||||| || ||||| ||||| | ||| | ||| Sbjct 30234 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 30183 >seq628 Length=16860 Score = 98.7 bits (108), Expect = 1e-16 Identities = 130/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535 || |||| | | ||||||| | ||| ||||| ||||||||||||||||||||||||||| Sbjct 10083 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 10024 Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592 || ||| |||||| ||||| | |||||| | | | ||| | || || |||| Sbjct 10023 GCCATGTGATTTGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 9965 Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646 ||||||| || |||| |||||||| || ||||| ||||| | ||| | ||| Sbjct 9964 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 9913 >seq244 Length=31480 Score = 98.7 bits (108), Expect = 1e-16 Identities = 130/174 (75%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 12476 TTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCCATCCACCTA 12535 || |||| | | ||||||| | ||| ||||| ||||||||||||||||||||||||||| Sbjct 15093 TTAAATTCTGTTCGAAATAGATATAATTTTAAAGTATATATGGCTTTTGCCATCCACCTT 15152 Query 12536 GCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT-TAACTGCAGGGAACTTTACCA-- 12592 || ||| |||||| ||||| | |||||| | | | ||| | || || |||| Sbjct 15153 GCCATGTGATCTGCACCAGGTTTCCTAAATTTGATTCCACCTGGA-GGTACACCACCAAG 15211 Query 12593 ATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGATTT 12646 ||||||| || |||| |||||||| || ||||| ||||| | ||| | ||| Sbjct 15212 ATAAATAATTG-ACAA-ATCCAAAAGCTCGCGGTAATCTTCACGGGGTAGTTTT 15263 >seq104 Length=41354 Score = 98.7 bits (108), Expect = 1e-16 Identities = 482/748 (64%), Gaps = 47/748 (6%) Strand=Plus/Minus Query 12233 TCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAAAT 12292 ||||||||||| | | || ||| ||| |||||||||||||||| ||| ||| Sbjct 12775 TCATCAAAGAAAGATAATGCAGCAGCCTCTTCAGTTAAATACCACAAATGGTTGCATAAT 12716 Query 12293 TTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCA-ATAAGTTCCT- 12350 |||| | || ||| |||||||| ||| || | | | ||| |||| ||| | Sbjct 12715 TTTTGAATTGATACTCTAGATATTTC----TCTATCAAATACT--TCATATAATTTCATA 12662 Query 12351 ----TTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCAT 12406 ||| |||| ||| || | |||||| | | | || | |||||||| ||||| Sbjct 12661 TCTTTTATAAATTGTAAGTCTTGATTTGGGGACTTATTTGGCAATGGACAAGTAAACCAA 12602 Query 12407 GCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTTC 12466 ||||||| || | | || ||||||||||||||||||| | | ||| || | Sbjct 12601 GCTTTGACGTAAAATTTAATAATAAAAACACAAATTTCACCGATTGCTTTTTTTGTTAAG 12542 Query 12467 ACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGCC 12526 | | || ||| |||| | | ||| ||||||||||||| ||| || ||| |||| Sbjct 12541 TCGGAAATATTGTATTGGCTTCTAAACAAAAATATTTTTAAGCAATAAATTGCTCGTGCC 12482 Query 12527 ATCCACCTAGCGTGGTGGAATGCACCCGG--------TTTTCGAAATTTTACTTAACTGC 12578 |||| || || || | || || || |||| ||||||| || | | Sbjct 12481 ATCCTTTGGGCTTGATGCATGGCTCCGGGAGGATGCATTTT---AATTTTATTT---TCC 12428 Query 12579 AGGGAACTTTA---CCAATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCC 12635 | || ||| |||||||| || | | |||||||| ||| || || ||||| | Sbjct 12427 A---AA--TTACCGCCAATAAAAATAAATATTAACTCCAAAAATTCACGATAATCTTCAC 12373 Query 12636 TTGGTTGATTTGAATC-AAGTTGCTTTTGGATAAAGTGATTAATGTCATCAATATGATTT 12694 || || || | || || || ||||| | ||| | ||| || || || |||| Sbjct 12372 GAGGCTGTTTAGTTTCTAATTTACTTTT-AACAAAATTCAGAATATCTTCTTTAACATTT 12314 Query 12695 TGTATTTTTTCTTGCACAT-ACGAATCTTCAATCCCATTAGAATATTGACTTATATC-AA 12752 | || | ||||| | ||||||||| || | ||||| | ||||| || Sbjct 12313 TCTAAAGCCAC-GCCACATGCCTGATCTTCAATTCCGATGTTATATTTGTTAATATCTAA 12255 Query 12753 TTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGGACCTGAGGT---TG 12809 ||| || || | | |||| |||||||||| | | | || | ||| || | Sbjct 12254 TTTATACCATTCT-TTTTGAAAATTTTTAAATAATTGAATTGCTGGGCTTGATGTAACTT 12196 Query 12810 TAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTGATGCCTGCAAG 12869 |||||||||| |||||||||| || | || || ||| | || |||||||| |||| Sbjct 12195 CTGGTATTTTAATTTCAAAAACAGATCTCAAAATTAGCTCATAAATATGATGCCTACAAG 12136 Query 12870 GCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCA-GCTCC-TTTACT 12927 | | ||| ||||||||||| | || ||| || | ||| | || ||||| |||| Sbjct 12135 GAAGATATAATAGTTTTTTACCGAGTTTTTGTT-CAATTAAAATACATGCTCCATTTAAG 12077 Query 12928 TGATCCTAGATTTGCAGCAGTAGTATCA 12955 | |||| ||| | |||||| |||||| Sbjct 12076 CG-TCCTGTATTGGAAGCAGTTGTATCA 12050 >seq32 Length=47903 Score = 95.1 bits (104), Expect = 2e-15 Identities = 223/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 12231 TTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAA 12290 ||| ||| || ||||||| || || | ||| || ||| |||||||||||| | | || Sbjct 12856 TTTTATCGAAAAATGCCAATGCAACTGCTTCGGGTGTTAGATACCACAAATGATTTCGAA 12915 Query 12291 ATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAAT----CAATAAGT 12346 |||| |||| ||| ||| ||||| ||| ||| | || ||| | |||| | Sbjct 12916 ATTTATTCATTGCTACTCTAGATACATTATTATCAATTGAACTATAGTTGTACAAT--TT 12973 Query 12347 TCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCAT 12406 | | |||||| |||||| | || ||| || | | || ||| || |||||| Sbjct 12974 TTGTATAAAAA--GTAAATCTTGATATGGTGCGGCTGCAGCAGTAGGTGCTGTAAACCAT 13031 Query 12407 GCTTTGATATACACTGTAGCAATAAAAACACAAATTTCA-GAA-ACGGATTTGATTAATT 12464 |||| |||||| | |||| | | ||| | |||||| ||| ||| | | ||| | || Sbjct 13032 GCTTCGATATAAATTGTAACTACAAATATACAAATATCACGAAGTCCGTTTTTTTCAAAA 13091 Query 12465 TCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTG 12524 || | | || |||| ||||| || | ||||||| | || ||| || ||||||| Sbjct 13092 CTAC--TTAATTCAAATTCATTACGGAACATGTATATTTTAAGAGAATAAATAGCTTTTG 13149 Query 12525 CCATCCACCTAGCGTGGTGGAATGCACCCGG 12555 ||||||| || || ||||| |||||| || Sbjct 13150 CCATCCATCTTGCATGGTGAGTTGCACCGGG 13180 >seq24 Length=50204 Score = 95.1 bits (104), Expect = 2e-15 Identities = 223/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 12231 TTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGCTAA 12290 ||| ||| || ||||||| || || | ||| || ||| |||||||||||| | | || Sbjct 6855 TTTTATCGAAAAATGCCAATGCAACTGCTTCGGGTGTTAGATACCACAAATGATTTCGAA 6914 Query 12291 ATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAAT----CAATAAGT 12346 |||| |||| ||| ||| ||||| ||| ||| | || ||| | |||| | Sbjct 6915 ATTTATTCATTGCTACTCTAGATACATTATTATCAATTGAACTATAGTTGTACAAT--TT 6972 Query 12347 TCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAACCAT 12406 | | |||||| |||||| | || ||| || | | || ||| || |||||| Sbjct 6973 TTGTATAAAAA--GTAAATCTTGATATGGTGCGGCTGCAGCAGTAGGTGCTGTAAACCAT 7030 Query 12407 GCTTTGATATACACTGTAGCAATAAAAACACAAATTTCA-GAA-ACGGATTTGATTAATT 12464 |||| |||||| | |||| | | ||| | |||||| ||| ||| | | ||| | || Sbjct 7031 GCTTCGATATAAATTGTAACTACAAATATACAAATATCACGAAGTCCGTTTTTTTCAAAA 7090 Query 12465 TCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTG 12524 || | | || |||| ||||| || | ||||||| | || ||| || ||||||| Sbjct 7091 CTAC--TTAATTCAAATTCATTACGGAACATGTATATTTTAAGAGAATAAATAGCTTTTG 7148 Query 12525 CCATCCACCTAGCGTGGTGGAATGCACCCGG 12555 ||||||| || || ||||| |||||| || Sbjct 7149 CCATCCATCTTGCATGGTGAGTTGCACCGGG 7179 >seq830 Length=16444 Score = 87.8 bits (96), Expect = 2e-13 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 12749 TCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGGACCTGAGGT- 12807 ||||||||| |||| | | | ||| ||||||| | ||| ||||||||||| || Sbjct 14968 TCAATTTCGGGCCAGGCTTGTTGGAATTTTTTAAAAATAGGAACATCAGGACCAATAGTA 14909 Query 12808 --TGTAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTGATGCCTG 12865 | | || ||||| ||||||||||| || || | | ||| |||| || |||| Sbjct 14908 TTTATTTTTAATTTAATTTCAAAAACACTTCTTAGCACTAATTCGTATATATGTCGCCTA 14849 Query 12866 CAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCA-GCTCC-TT 12923 ||||| ||||| || || ||| | | | || |||||| | | | | || || || || Sbjct 14848 CAAGGTAAATATAAAAGATTTCGTCCTATCAGTTGTTCCAAT-ATAATACAGGCACCATT 14790 Query 12924 TACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTT-TAATAAAGTCTGGA 12982 || || || | |||| || || |||||||| |||| ||||| || | | | || Sbjct 14789 TAACCGACCCGTG-TTTGATGCCGTCGTATCACAACATAAAGCTTGTACTTTA-TTTGTT 14732 Query 12983 ATTCCCCAATCATTAATAGCGTCAAACATTGCATCAGCTTG 13023 | ||||||||||| ||| ||||| ||||||| ||||| Sbjct 14731 ACACCCCAATCATTTATAATATCAAATATTGCATTTGCTTG 14691 >seq1316 Length=1194032 Score = 82.4 bits (90), Expect = 1e-11 Identities = 192/281 (68%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 12749 TCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGGACCTGAGGT- 12807 ||||||||| |||| | | | ||| ||||||| | ||| ||||||||||| || Sbjct 1153334 TCAATTTCGGGCCAGGCTTGTTGGAATTTTTTAAAAATAGGAACATCAGGACCAATAGTA 1153275 Query 12808 --TGTAGGTATTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAAATATGTGATGCCTG 12865 | | || ||||| ||||||||||| || || | | ||| |||| || |||| Sbjct 1153274 TTTATTTTTAATTTAATTTCAAAAACACTTCTTAGCACTAATTCGTATATATGTCGCCTA 1153215 Query 12866 CAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCA-GCTC-CTT 12923 ||||| ||||| || || ||| | | | || |||||| | | | | || || | || Sbjct 1153214 CAAGGTAAATATAAAAGATTTCGTCCTATCAGTTGTTCCAAT-ATAATACAGGCACTATT 1153156 Query 12924 TACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTT-TAATAAAGTCTGGA 12982 || || || | |||| || || |||||||| |||| ||||| || | | | || Sbjct 1153155 TAACCGACCCGTG-TTTGATGCCGTCGTATCACAACATAAAGCTTGTACTTTA-TTTGTT 1153098 Query 12983 ATTCCCCAATCATTAATAGCGTCAAACATTGCATCAGCTTG 13023 | ||||||||||| ||| ||||| ||||||| ||||| Sbjct 1153097 ACACCCCAATCATTTATAATATCAAATATTGCATTTGCTTG 1153057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63302657476580