Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1092 91.5 3e-14 seq405 89.7 1e-13 seq357 89.7 1e-13 seq412 87.8 4e-13 seq267 87.8 4e-13 seq622 82.4 1e-11 >seq1092 Length=7556 Score = 91.5 bits (100), Expect = 3e-14 Identities = 228/343 (66%), Gaps = 5/343 (1%) Strand=Plus/Minus Query 5306 TGTAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTC-ACATATGGATG 5364 ||||||||||| ||||||| || | ||| | |||||| |||| ||| || | | Sbjct 1052 TGTAAACTCTCTAAACATTTTTTCTTTCAATGTGCGGTTGAAATGTTCTACA-ATACACG 994 Query 5365 CTTTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGA 5424 |||| | | | || | || ||||| || ||| ||||||| || |||| | | || Sbjct 993 CTTTCATAGTACTATAAGTCGAATATTTATGTATGTTGTGCTTCTCCATCTACGCGTCGA 934 Query 5425 ATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTT 5484 || |||||||| |||||||| | ||| | || | || || | || Sbjct 933 ATGTAGAATTGTAAAATTCTTTACCTTTATCGAGCTGTAATAGTTTTGGTGTGCGTTTAA 874 Query 5485 GCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGAA 5544 |||| | | ||| || || || | || ||| | || ||||||| || | ||| | Sbjct 873 GCTGTATTTTTGAC---ATTGCGCTGGAAACTTCTTTAGCAGTTTTAGATTTTAATGGTA 817 Query 5545 CTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTAT 5604 ||||||||| | |||| ||| ||||| | || | ||||||||| ||||||| Sbjct 816 TCGCCCAGGCAAACTTTGTAAAACAGTCTATAACGCATAGAATATACTTGTACCCTTTAT 757 Query 5605 TGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647 | | | | |||||| ||||| || ||||||||||||||||| Sbjct 756 TTTTTTTCGAATATGGTATCATATCGACCAAGTCAGCTTGCCA 714 >seq405 Length=25132 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7981 AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTC 8040 ||||||||||||||| || || |||||||| ||| || | |||||||| |||||| Sbjct 9953 AGGTTATCAGTACTGTGGACCTGGTACAAATTTAAAAAAACGCTTAGCTCGCGGTGATAA 10012 Query 8041 AGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATAT 8082 ||||||||||| | ||||| |||| ||||| || || || || Sbjct 10013 AGGTATAAATCTTCTGGACTCTGCTTGTAAAGAGCATGACAT 10054 >seq357 Length=31102 Score = 89.7 bits (98), Expect = 1e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 6165 TATAACTCCAGCCTCCCTAAGCTCTTCAATAATTGACATGATTTCATTCGTGTGACTTGG 6224 ||| ||||||||||| | |||||||| | ||| || || ||||| || | ||||| Sbjct 27687 TATTACTCCAGCCTCACGCAGCTCTTCGAAAATCGATATAATTTCGTTTGAAACACTTGT 27746 Query 6225 GTTTCCAGCAGCTTGAGATGCCATCAGTAGTCGCAAACGATCAACTAGCTCATTTGGATC 6284 || ||||| || | || || || ||||| || || ||||| ||||| ||||| ||||| Sbjct 27747 ATTACCAGCTGCCTTTGACGCTATAAGTAGACGTAATCGATCGACTAGTTCATTCGGATC 27806 Query 6285 ATCCCAGTAAAC 6296 |||||||| || Sbjct 27807 GTCCCAGTACAC 27818 Score = 86.0 bits (94), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 5513 GACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATATC 5572 ||| ||| ||| |||||||||| | ||| | ||||||||| ||||| ||| || Sbjct 27446 GACTTCTTTACCTGTTTTAGACTTTAATGGCAATGCCCAGGCTCGTTTTGTAAAACAGTC 27505 Query 5573 TATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCAAC 5632 || | || | | |||||||| |||||| | ||| |||||||||||| ||||| Sbjct 27506 AATTACGGTCAAAATGTACTTGTAATTTTTATTTTTTTTTGAATATGGAATCATTTCAAC 27565 Query 5633 CAAGTCAGCTTGCCA 5647 ||||||||||||||| Sbjct 27566 CAAGTCAGCTTGCCA 27580 >seq412 Length=24129 Score = 87.8 bits (96), Expect = 4e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7981 AGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTC 8040 ||||||||||||||| || || |||||||| || || ||||| ||| |||||| Sbjct 8883 AGGTTATCAGTACTGTGGGCCTGGTACAAAATTGAATAAACGATTAAATCGTGGTGATAA 8942 Query 8041 AGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTA 8088 |||||| || ||| | || | |||||||| ||||||||||| ||||| Sbjct 8943 AGGTATCAACCCTCTAGATTCGGCGTGTAAAGAACACGATATCGCTTA 8990 >seq267 Length=30086 Score = 87.8 bits (96), Expect = 4e-13 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 7919 AGACGTGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATA 7978 |||| ||||||||| || | ||| | || || | ||||| ||||| || | Sbjct 14561 AGAC-TGGTAAAGGATTTGTAAACTTCCTTATAAATAGTCTCCCGGTTGAAGCCCATGTT 14503 Query 7979 CCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGAT 8038 ||||| |||||||| || ||||| |||||||| ||| || || ||| || |||||| Sbjct 14502 CCAGGCTATCAGTATTGTGGTCCTGGTACAAAATTAAAAAATAGGCTAGATCACGGTGAT 14443 Query 8039 TCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAAT 8098 ||| ||||| || ||||||||||| ||| || |||||||| | || ||| | Sbjct 14442 AAAGGAATAAACCCATTGGACGCTGCTTGTCGTGATCACGATATTGTATATGCAACGA-- 14385 Query 8099 CGTGAAAATTTGGAAGCTCGTCACGAGGCTGATAAA 8134 || | ||||| || | ||| || | |||||| || Sbjct 14384 -GTAATAATTTAGACGATCGACATAAAGCTGATCAA 14350 >seq622 Length=16737 Score = 82.4 bits (90), Expect = 1e-11 Identities = 171/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518 |||||| | || | || || || ||| | ||||||||| ||| | | ||| ||| | | Sbjct 701 ACAACTTTATATAACAAGAAAAAATATATAATTCACTATGAAACTCTCAAATAATATATT 760 Query 4519 GATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGG 4578 | ||||||||| | |||||||||| ||| || ||||| ||||| || ||| Sbjct 761 AAATTAGGTTTAAAATTAGAGAAAATACATAGAGTTTTAGAATTTAGTCAATCTGATTGG 820 Query 4579 CTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaa 4638 | ||| | ||| ||| ||||| || | |||||| ||||| || ||| Sbjct 821 TTGAAAGTTTTTATTGATTTTAATACTAATCTTAGATCAAAAGCTAAAAATGATTTTGAA 880 Query 4639 aaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGA 4698 ||| | | || |||||||||||| || |||| |||| |||||| |||||| || Sbjct 881 AAAGAATATTTTAAATTAATGAACAACAGTGTTTATGGACGTACGATGATGAATGTTAGA 940 Query 4699 AAATATAAAGATATA 4713 || || |||||| Sbjct 941 AATCATGTTGATATA 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97969722947080