Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq40 125 8e-24 >seq40 Length=47542 Score = 125 bits (138), Expect = 8e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||| ||||||||||| || ||| ||| ||||| || ||||||||||| || Sbjct 39893 ACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAACCCATAAAAACATCTAGC 39834 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 ||| | |||||| || | ||||||||| | | | |||||||| || || ||||| Sbjct 39833 CTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTTTCATTGACAATACCATC 39774 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 || ||||||||||| |||| | |||||| | ||||| | ||| || ||| | Sbjct 39773 TGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGTTCATCATCAGTCAATCT 39714 Query 21946 TTTCCAATC 21954 |||||||| Sbjct 39713 ATTCCAATC 39705 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || |||||||| ||||||||||||| || || | |||||||| || ||||| ||| Sbjct 40204 AAAGTTAAACCTGGCATTAATCCTCGTTTCTTCATCCAAAATAATGCAGCAAAACTTCCA 40145 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 || || || || || ||||||||||||||||||||||||| |||||| | || | || Sbjct 40144 GAGAAAAATATACCTTCAACGGCAGCAAATGCAACTAATCTTTCACCAAAAGTCGCTTTA 40085 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 |||| |||||| || ||||| | |||||||| ||| | ||| || || ||| Sbjct 40084 CTATCGCTTATCCACTTCAGAGCCCAATCTGCCTTTTTTTTTACACACGGCATGGTTTCA 40025 Query 21707 ATAGCTTTTAA 21717 ||||| || || Sbjct 40024 ATAGCATTAAA 40014 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 21286 ACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATAT-TGACACATTAATT 21344 ||| |||| ||| | || | ||||| || |||||||| |||||| || | |||| || Sbjct 40510 ACACCCCAATTCAGTCAACAGCCTATCAGCAACAAATTCAATATATATGGC-CATTCTTT 40452 Query 21345 CACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAG 21404 |||| |||| || | || | | ||||| | ||| |||||||||||| || ||| |||| Sbjct 40451 CACAGCTCATGCCAAGCATTCTAACAGGTAAAGCATTTGTCAAAAAATCTTGTTCAATAG 40392 Query 21405 AGACGGCTTCAACAATTATAT 21425 || |||||| |||||||| Sbjct 40391 TCACTGCTTCACAAATTATAT 40371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531874071984800