Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq40 125 9e-24 seq48 96.9 4e-15 seq2 82.4 1e-10 >seq40 Length=47542 Score = 125 bits (138), Expect = 9e-24 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| || || ||| || || | || ||||||| || || || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||||| | ||| || |||||| || || || ||||| || |||||||| | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 33446 CAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGG 33502 ||| | ||| || ||| || || || || ||||||||| |||||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 |||| ||||||||||| ||||| ||||| || |||||||| | | ||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || ||||| || || | |||||||||||| ||||| || || || || || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || || |||||||||||||| || | || |||||| | |||||||||| | | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 ||||| || || || || || |||||||| || ||||| || |||||| | | Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGT 39731 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCAT 33781 || || || | | |||||||||||| Sbjct 39730 TCATCATCAGTCAATCTATTCCAATCAT 39703 >seq48 Length=686774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 62940 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 62999 || ||||| ||||| ||||||||||||||||| || || || | ||||| |||||| || Sbjct 303715 TGAATTATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTT 303774 Query 63000 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||| || || ||||| ||||| || | |||| ||||||||||||| ||||| Sbjct 303775 TTTGCATTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTGAGA 303830 >seq2 Length=2033018 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 ||||| ||||| | || |||||||| || | |||||||| ||||| ||||| ||||| Sbjct 1647035 GTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATT 1646976 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT 62499 ||||| | || || |||||| | ||| ||||| | ||||| ||||||| || Sbjct 1646975 GGTGCTAATAACAATGAATTTCTTACACC--ATGTTTAGCAATTTTTTCTTTTAATATTT 1646918 Query 62500 CCCAATTCCAAAGATC 62515 |||||||||| | ||| Sbjct 1646917 CCCAATTCCATAAATC 1646902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622915896903200