Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3263 125 7e-24 seq3604 86.0 6e-12 >seq3263 Length=267844 Score = 125 bits (138), Expect = 7e-24 Identities = 189/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || |||||||| || |||||| |||| || |||| | || || || || || ||| Sbjct 108147 ACACATGATGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 108206 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | ||| |||||||||||||| |||||||| || || |||||| | ||||| || Sbjct 108207 GGTTTCCTTCGCATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAGA 108266 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || | || | |||||||| || || | || || | ||||||||||| || | Sbjct 108267 GCACTGGCCGATGCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAGT 108326 Query 71852 GGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGT 71911 |||| ||| || || |||||| || || ||| |||| ||| | | |||| | Sbjct 108327 GGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAGA 108386 Query 71912 CAAGTGTTTGGTAAAATTCGCTATATGAA 71940 || | ||||| |||||| | |||||||| Sbjct 108387 GAAATTTTTGGAAAAATTAGGTATATGAA 108415 >seq3604 Length=163256 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| || | || | || ||| |||||| | ||||||| | | | | | | ||||| | Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 65933 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| ||||||||||| | || | || || | ||| | ||||||| Sbjct 65932 ATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 65882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| || | || | || ||| |||||| | ||||||| | | | | | | ||||| | Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 66161 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||||| ||||||||||| | || | || || | ||| | ||||||| Sbjct 66160 ATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 66110 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 66570 CAAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATC 66511 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||| | || || | || ||| || || ||||| ||||| || || || || Sbjct 66510 TTCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGA 66451 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACT 26943 ||||| || | || | || ||| |||||| | ||||||| | | | | | | |||| Sbjct 66450 CCAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACT 66392 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | || ||||| ||||||||||| | || | || || | ||| | ||||||| Sbjct 66391 ACAATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 66338 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| || | || | || ||| |||||| | ||||||| | | | | | | ||||| | Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 65705 Query 26947 ACATTCAAAAAGAATCTAC 26965 | ||||| ||||||||||| Sbjct 65704 ATATTCAGAAAGAATCTAC 65686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478638347214400