Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1102 125 2e-23 seq3145 87.8 5e-12 seq40 87.8 5e-12 >seq1102 Length=1235416 Score = 125 bits (138), Expect = 2e-23 Identities = 233/339 (69%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||| | || |||||||| |||||||||||||| || | |||||| || || | Sbjct 520671 AGGTGACTTGGGCCCAGTTTATGGATTTCAATGGCGTCATTATGGTGCTGAATATGTAGA 520612 Query 111548 CATGCACGACTCATATGATTCAC---AGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 |||| || || | ||| | || | |||||| | || || ||||| || Sbjct 520611 TGTGCATA---CAGATTACTCAGGAAAAGGTATTGATCAGCTTCAAAACGTCATCAATAC 520555 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 |||||| | ||||| | | || || |||||| ||||||||| ||| ||| | Sbjct 520554 AATTAAAACTAACCCTGACGATAGGCGAATGCTTATGATTGCATGGAATCCA--TGCGAT 520497 Query 111665 GGAA--AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG 111722 | | |||||||| | |||||||||||| | || ||||||| ||| || || Sbjct 520496 GTACCTAAAATGGCCTTACCACCATGTCATTGTTTGGTACAGTTTTTTGTCGCTGATGGA 520437 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 || || || |||||||| || ||||| ||||| || ||||| || || || |||||| Sbjct 520436 TATCTGTCGTGTCAAATGTACCAACGATCAGCTGACATGGGTCTAGGAGTACCCTTTAAT 520377 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| ||||| || ||||||| | | | || || ||| Sbjct 520376 ATTGCCAGTTATTCATTACTTACATACATGATAGCCCAT 520338 >seq3145 Length=285325 Score = 87.8 bits (96), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 145562 CTTGCATACACTTTGGAACACTTCTTCGTCTGGATCATACACCGCAAGAAGGTATGCACC 145621 ||| |||| ||| || || |||| ||||||||||| || | ||| | |||| Sbjct 19570 CTTACATATACTCTGATACTCTTCACTATCTGGATCATAACATGCTAATAGGAAACCACC 19629 Query 145622 ATATACACCAGTACGTTTTCCGCGACCGGTATACCCCGCAATTGGTACAAGATCACAACT 145681 ||| ||||||||||||||| ||||| ||| || | | ||| | ||| | Sbjct 19630 ATAAGTACCAGTACGTTTTCCACGACCTAAATAACCTCCCAAAACTACTACATCTATTGT 19689 Query 145682 ATCACCCATTCCGGCAAGATAATCCTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGA 145741 |||||| | || | | |||||| ||||| | ||||| ||||||| | |||||||| | Sbjct 19690 ATCACCAACACCATCCAAATAATCTTTTTTTAATTTTAACCAATTGCGTGAACGTTTGGC 19749 Query 145742 TGGTTCATAGCTAGAGTTATCGTCCAATGATTTTACCATTA 145782 | |||||| ||| | || || |||| ||| ||||||| Sbjct 19750 TATTTCATAAGTAGCTTCTTCTTCTAATGTTTTAACCATTA 19790 >seq40 Length=47542 Score = 87.8 bits (96), Expect = 5e-12 Identities = 136/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATG---AACGTTCATTCGCGGAA 22491 || || |||||||||||||| ||||| ||||| | | || || | || | ||| Sbjct 40044 AAAAAAAAGGCAGATTGGGCTCTGAAGTGGATAAGCGATAGTAAAGCGACTTTTGGTGAA 40103 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 | | |||||||||||| |||||||| || || || |||||| ||| |||| | Sbjct 40104 AGATTAGTTGCATTTGCTGCCGTTGAAGGTATATTTTTCTCTGGAAGTTTTGCTGCATTA 40163 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAATTA 22609 |||||| | || ||||| | | | ||||| ||| |||| ||||| |||||| | ||| Sbjct 40164 TTTTGGATGAAGAAACGAGGATTAATGCCAGGTTTAAC--TTTCAGCAATGAGCTGATTT 40221 Query 22610 GCCGAGATGAGG 22621 ||||||||| Sbjct 40222 CTAGAGATGAGG 40233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303286469143640