Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3666 96.9 3e-15 seq3866 86.0 5e-12 seq3604 86.0 5e-12 >seq3666 Length=820529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 ||||||| | ||| ||||| | ||||| ||||| || ||||| ||| | || || | Sbjct 197050 TTTTTAG--ATTCAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTT 197107 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||||| ||| | || |||| || | || ||| || || ||||| ||||| Sbjct 197108 GGAAGTTGAGTCATCTGATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGG 197167 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAA 24153 || || || ||||||||| | |||| | | ||| |||||||| ||||| | || | Sbjct 197168 TATCCCACCAGATCAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCAC 197227 Query 24154 ACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || | ||| || |||||||||||||||||||| |||| || ||||| Sbjct 197228 ACTTTC-CGACTACAACATTCAAAAAGAATCTACCCTTCACTTGGTGTT 197275 >seq3866 Length=782398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || ||||| | || || || | || ||| | || |||||| | Sbjct 247795 CAACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTC 247854 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| ||||| | |||||| || ||| || |||||||| || || ||||| Sbjct 247855 TTCTGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGA 247914 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | |||| | || ||||||||| || ||||||| | | | ||||| Sbjct 247915 TCAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTA 247974 Query 24167 TAACATTCAAAA 24178 |||||| ||||| Sbjct 247975 TAACATCCAAAA 247986 >seq3604 Length=163256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| || |||| | || ||| || ||| | ||||||| | | | | | | | || || | Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 65705 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||||||| |||| ||||| Sbjct 65704 ATATTCAGAAAGAATCTACACTTCACTTAGT 65674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| || |||| | || ||| || ||| | ||||||| | | | | | | | || || | Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 65933 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||||||| |||| ||||| Sbjct 65932 ATATTCAGAAAGAATCTACACTTCACTTAGT 65902 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| | || || | || ||| || || ||||| ||||| || || || || || Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||| || |||| | || ||| || ||| | ||||||| | | | | | | | || || | Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACTACA 66161 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||||||| |||| ||||| Sbjct 66160 ATATTCAGAAAGAATCTACACTTCACTTAGT 66130 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 66570 CAAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATC 66511 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| | || || | || ||| || || ||||| ||||| || || || || Sbjct 66510 TTCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGA 66451 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| || |||| | || ||| || ||| | ||||||| | | | | | | | || | Sbjct 66450 CCAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTA-CATTATCTGACT 66392 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | || ||||| |||||||||||| |||| ||||| Sbjct 66391 ACAATATTCAGAAAGAATCTACACTTCACTTAGT 66358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429914935823100