Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3666 109 5e-19 seq3866 100 3e-16 >seq3666 Length=820529 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | ||| || || |||||||||||||| ||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| |||||||| || || || ||| Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| |||| | | | || | | ||| | ||||| | Sbjct 197170 ATACCTTCCTTGTCTTGGATTTT-AGCTTTAACATTTTCAATGGAATCAGATGACTCAAC 197112 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||||| || | |||||| || || ||||||||| Sbjct 197111 TTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||| || || |||||||||||||| ||| Sbjct 197518 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197459 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| ||||| || ||||| || ||| Sbjct 197458 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197399 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | | ||| | || || | Sbjct 197398 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197339 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || |||||||| || ||||| Sbjct 197338 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||| || || |||||||||||||| ||| Sbjct 197746 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197687 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| ||||| || ||||| || ||| Sbjct 197686 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197627 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | | ||| | || || | Sbjct 197626 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197567 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || |||||||| || ||||| Sbjct 197566 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | ||| || || |||||||||||||| ||| Sbjct 197974 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197915 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| ||||| || ||||| || ||| Sbjct 197914 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197855 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | | ||| | || || | Sbjct 197854 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197795 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || |||||||| || ||||| Sbjct 197794 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | || || ||||| || |||||||| ||| Sbjct 198202 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 198143 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| ||||| || ||||| || ||| Sbjct 198142 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 198083 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | | ||| | || || | Sbjct 198082 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 198023 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || |||||||| || ||||| Sbjct 198022 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq3866 Length=782398 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| ||||| ||||| || || || || || ||||||||||| ||| ||| Sbjct 247988 CCTTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 247929 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGC 131163 | ||||| || || || || ||||| |||||||| || ||| ||| || |||| | Sbjct 247928 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATC-TTGAATTTTAGCTTTGACATTT 247870 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||| || | ||||||| || | ||| | ||| || || || || ||||| ||| Sbjct 247869 TCGATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACG 247810 Query 131224 AAAATCTGCATG 131235 ||||| |||||| Sbjct 247809 AAAATTTGCATG 247798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471989081356800