Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3263 156 4e-33 seq3604 138 1e-27 seq3666 123 2e-23 seq3866 102 7e-17 seq3365 93.3 4e-14 >seq3263 Length=267844 Score = 156 bits (172), Expect = 4e-33 Identities = 188/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 50985 GTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCG 51044 || |||||| | ||| || || | |||||||||||||| ||| | |||||||||| | Sbjct 108443 GTCAAACTTTCTCTTGCATCCTTCATAGTTCATATACCTAATTTTTCCAAAAATTTCTCT 108384 Query 51045 TTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGT 51103 |||| | || |||| || || | ||| || |||||||||||||| || ||| || Sbjct 108383 TTCTCTCCACC-CCTGATCATGAATACCACATATTGACCACATACATCCAACAAAACCAC 108325 Query 51104 TAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCA 51163 | || |||||||| |||| ||| || | || || ||| | ||||||| ||| ||| Sbjct 108324 TTGGGTCGCGACCGTCCATGCTATACTTGTCATTGAGATAAATGGCATCGGCCAGTGCTC 108265 Query 51164 TGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGT 51223 | |||| | || |||||||||| || || || |||||||||||||| | | |||||| Sbjct 108264 TATCTGGAGTATCAGTCCATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAACCGT 108205 Query 51224 GCATCTTGCCCTC 51236 |||||||||| || Sbjct 108204 GCATCTTGCCTTC 108192 >seq3604 Length=163256 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| |||| || ||| ||||||| | ||||| || || || Sbjct 66566 ATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66507 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || |||| |||||| ||||| ||||| || ||||| |||||| Sbjct 66506 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66447 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| |||||||| ||||||| || || | || |||||| Sbjct 66446 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66387 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| |||||||| || || || ||||| || | || | ||||||| Sbjct 66386 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 66338 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| ||||||| | ||||| || || || Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| || |||| |||||| ||||| ||||| || ||||| ||||| Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| |||||||| ||||||| || || | || ||||| Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65932 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| |||||||| || || || ||||| || | || | ||||||| Sbjct 65931 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 65882 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| ||||||| | ||||| || || || Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| || |||| |||||| ||||| ||||| || ||||| ||||| Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| |||||||| ||||||| || || | || ||||| Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 66160 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| |||||||| || || || ||||| || | || | ||||||| Sbjct 66159 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAA 66110 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| ||||||| | ||||| || || || Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| |||| || |||| |||||| ||||| ||||| || ||||| ||||| Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| |||||||| ||||||| || || | || ||||| Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65704 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| |||||||| || || || ||||| || Sbjct 65703 TATTCAGAAAGAATCTACACTTCACTTAGTACT 65671 >seq3666 Length=820529 Score = 123 bits (136), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| |||||| | ||||| | ||||| ||||| ||| Sbjct 197064 ATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCT 197123 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || | || |||| |||| || ||||| ||||| || ||||| || Sbjct 197124 GATTCCATTGAA--AATGTTAAAGCTAAAATCCAA-GACAAGGAAGGTATCCCACCAGAT 197180 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || |||||||| || ||| | ||||| | ||||| | ||| ||| Sbjct 197181 CAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTAC 197240 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || |||||||||||||| || || || || ||| Sbjct 197241 AACATTCAAAAAGAATCTACCCTTCACTTGGTG 197273 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || || || |||| ||| | ||||| || || ||| Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | ||||| | ||||| | ||| ||||| Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || || || || Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGT 197500 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || || || |||| ||| | ||||| || || ||| Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | ||||| | ||||| | ||| ||||| Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || || || || Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGT 197728 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || || || |||| ||| | ||||| || || ||| Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | ||||| | ||||| | ||| ||||| Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || || || || Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGT 197956 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||| | || || || |||| ||| | ||||| || || ||| Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||| || ||| ||||||||||| || ||||| |||||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | ||||| | ||||| | ||| ||||| Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 198155 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || || ||||| || || || || ||| | | || |||| ||| Sbjct 198156 ATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGGA 198203 >seq3866 Length=782398 Score = 102 bits (112), Expect = 7e-17 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || ||||||| | || || ||||| ||| Sbjct 247799 ATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCT 247858 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| |||| ||| || |||||||| || ||||| || Sbjct 247859 GACACTATCGAAAATGTCA---AAGCTAAAATTCA-AGATAAAGAAGGTATCCCACCCGA 247914 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || |||||||| || | ||||||| || ||| || ||||| Sbjct 247915 TCAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTA 247974 Query 25175 CAATATTCAAAA 25186 || || ||||| Sbjct 247975 TAACATCCAAAA 247986 >seq3365 Length=261510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || || |||||||| |||||||||| ||||| ||||| ||||||| ||| Sbjct 113759 AGGCATTCCCCCGGATCAACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAAGATGGTCG 113818 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | ||||||||||| || || || || || || || ||||| || | |||| Sbjct 113819 CACATTATCTGATTACAATATACAGAAGGAGTCAACTCTTCACTTAGTACTTCGCTTAAG 113878 Query 25220 AGGAGG 25225 ||| || Sbjct 113879 AGGTGG 113884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433306769636300