Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq40 181 1e-40 seq3584 141 1e-28 seq3530 136 4e-27 seq2765 134 2e-26 seq236 131 2e-25 seq48 129 7e-25 >seq40 Length=47542 Score = 181 bits (200), Expect = 1e-40 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || |||| |||||||||||| ||||||||||| | | |||||||||||| Sbjct 40231 TCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCTTC 40172 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | |||||||| || ||||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 40171 ATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATGCA 40112 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | | ||| ||||| | || | || ||| ||||| || | ||||||||| || Sbjct 40111 ACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTGCC 40052 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 ||||| || | ||| || | ||||| ||||| ||||||| Sbjct 40051 TTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA 40012 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||||||||| ||||| | | ||||||||| ||||| | ||||||||| ||||| Sbjct 39913 ATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGA 39854 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||||||||| ||||| | || |||||||||||||||| || || ||| Sbjct 39853 AACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGA 39794 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| |||||||| || || |||||||| || |||| || |||||| || Sbjct 39793 TTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGA 39734 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATC 93570 |||||||| | | ||| |||||| Sbjct 39733 CGTTCATCATCAGTCAATCTATTCCAATC 39705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 93589 ATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTC 93648 || ||||||||| ||| ||||||| || |||||| |||||| ||||| |||| || || Sbjct 39620 ATTGACTTCTTCAACATTCCAAAAAGACGCTTCTTGTTTTTTATACATGGCCCAAATATC 39561 Query 93649 TTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | |||| || ||||||||||||||||| | || |||||||| | ||| || || Sbjct 39560 ATCATATATTATAGGAAATATGACAAAACGTCTTGGATTATCTTTCAATAAGGGTTC 39504 >seq3584 Length=176601 Score = 141 bits (156), Expect = 1e-28 Identities = 96/107 (90%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 72294 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGG 72353 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||||||||||||||||||||||| |||| ||| | ||||| Sbjct 72354 AGCGTGGGTTCGAACCCCACACCTGACAATGTATTTTTGCAGTTTTT 72400 >seq3530 Length=196193 Score = 136 bits (150), Expect = 4e-27 Identities = 84/89 (94%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 141794 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 141853 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||||| Sbjct 141854 CGTGGGTTCGAACCCCACACCTGACAAAT 141882 >seq2765 Length=298822 Score = 134 bits (148), Expect = 2e-26 Identities = 85/91 (93%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 171465 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 171406 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||||||||||||| || Sbjct 171405 TGGGTTCGAACCCCACACCTGACAAATTTTT 171375 >seq236 Length=649312 Score = 131 bits (144), Expect = 2e-25 Identities = 93/105 (89%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 271415 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 271356 Query 126324 TGGGTTCGAACCCCACACCTGACAA--ATTATTATTGGAATTTTT 126366 ||||||||||||||||||||||||| ||| | ||| |||||| Sbjct 271355 TGGGTTCGAACCCCACACCTGACAACCTTTAATTTTGCTATTTTT 271311 >seq48 Length=686774 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 299662 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAG 299603 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||| ||||||| Sbjct 299602 CGTGGGTTCGAACCCCACACTTGACAAA 299575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556832817744800