Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3604 95.1 1e-14 seq3666 82.4 6e-11 >seq3604 Length=163256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || ||| ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363 ||| | | || | || || ||||||||||||||| | | | ||| | || || Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTAT--CTGACTAC 65706 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || |||||||||||||| || ||||| | ||||| || ||||| Sbjct 65705 AATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGTGG 65656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || ||| ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363 ||| | | || | || || ||||||||||||||| | | | ||| | || || Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTAT--CTGACTAC 65934 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || |||||||||||||| || ||||| | ||||| || || || Sbjct 65933 AATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 65884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| | || ||||||||||| || ||||| ||| | Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || ||| ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363 ||| | | || | || || ||||||||||||||| | | | ||| | || || Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTAT--CTGACTAC 66162 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| || |||||||||||||| || ||||| | ||||| || || || Sbjct 66161 AATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || |||||||| ||||| ||||| |||| ||||||||||| || ||||| ||| | Sbjct 66569 AAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCT 66510 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || ||| ||| | || ||| ||||| ||||| ||||| | || || Sbjct 66509 TCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 66450 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111361 ||||| | | || | || || ||||||||||||||| | | | ||| | || | Sbjct 66449 CAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTAT--CTGACT 66392 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | ||||| || |||||||||||||| || ||||| | ||||| || || || Sbjct 66391 ACAATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66340 >seq3666 Length=820529 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 111178 AGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACG 111237 || || || ||||| || ||||||||||| |||| || ||||| || || ||||| Sbjct 197055 AGATTCAACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTT 197114 Query 111238 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111297 || | ||||| ||| | || ||| ||||| ||||| ||||| | || Sbjct 197115 GAGTCATCTGATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCA 197174 Query 111298 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGG 111355 |||||||| | | || | ||| || || ||| | ||||| | | ||| | Sbjct 197175 CCAGATCAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTT-- 197232 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| || || || |||||||||||||| || || || ||||||||||| || ||||| Sbjct 197233 CCGACTACAACATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGG 197290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423019273684000