Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3666 150 2e-31 seq3604 122 7e-23 seq3866 114 1e-20 seq1800 93.3 4e-14 seq2154 87.8 2e-12 >seq3666 Length=820529 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| |||||||| || |||||||| ||||| | ||||| || | Sbjct 197061 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 197120 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || || | ||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 197121 TCTGATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGAT 197180 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||| | || |||||||| || || | || || ||||| | ||||| ||| Sbjct 197181 CAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTAC 197240 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| ||| | || || || ||||| | || || ||| Sbjct 197241 AACATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGGT 197291 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || | ||||| ||| | | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || | || || || |||||||| || ||||| ||||| || ||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| || || | || || ||||| | ||||| |||||| Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| | || || |||||||| | || || ||| Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGT 197519 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || | ||||| ||| | | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || | || || || |||||||| || ||||| ||||| || ||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| || || | || || ||||| | ||||| |||||| Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| | || || |||||||| | || || ||| Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGT 197747 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || | ||||| ||| | | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || | || || || |||||||| || ||||| ||||| || ||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| || || | || || ||||| | ||||| |||||| Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| | || || |||||||| | || || ||| Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGT 197975 >seq3604 Length=163256 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || || ||||| ||||| | ||||| ||| | | Sbjct 66110 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66051 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| ||||| ||||||||||| || || ||||| || ||| Sbjct 66050 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65991 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| ||||| || || ||| ||| || | || || ||||| Sbjct 65990 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65931 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || | || ||||| | || | || ||||| Sbjct 65930 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 65884 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || || ||||| ||||| | ||||| ||| | | Sbjct 66338 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66279 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| ||||| ||||||||||| || || ||||| || ||| Sbjct 66278 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66219 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| ||||| || || ||| ||| || | || || ||||| Sbjct 66218 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66159 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || | || ||||| | || | || ||||| Sbjct 66158 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66112 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| ||||| |||||| | || || ||||| ||||| | ||||| ||| | Sbjct 66569 AAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCT 66510 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | || || | ||| ||||| ||||||||||| || || ||||| || Sbjct 66509 TCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 66450 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || | || || ||||| ||||| || || ||| ||| || | || || ||| Sbjct 66449 CAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTAC 66390 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| |||||||| || | || ||||| | || | || ||||| Sbjct 66389 AATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66340 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || || ||||| ||||| | ||||| ||| | | Sbjct 65882 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 65823 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| ||||| ||||||||||| || || ||||| || ||| Sbjct 65822 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65763 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| ||||| || || ||| ||| || | || || ||||| Sbjct 65762 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65703 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| |||||||| || | || ||||| Sbjct 65702 ATTCAGAAAGAATCTACACTTCACTTAGT 65674 >seq3866 Length=782398 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || ||||| | || || || || |||| ||||| || || | Sbjct 247796 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 247855 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || ||||| ||||||||||| || || ||||| ||||||||| Sbjct 247856 TCTGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGAT 247915 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || || |||||||| ||| | || ||| || || | || ||||| Sbjct 247916 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTAT 247975 Query 22396 AACATTCAAAA 22406 ||||| ||||| Sbjct 247976 AACATCCAAAA 247986 >seq1800 Length=381758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || ||||| |||||| | |||||||| ||||| || | || ||| || Sbjct 276023 GGTATTCCTCCGGATCAGCAACGTTTGATATTTGCTGGCAAGCAACTTGAAGATGGGCGT 276082 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | || ||||||||||||||||||||||| ||| | || || ||| | ||||| | Sbjct 276083 ACTCTGTCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGATTGAGA 276142 Query 22441 GGAGGT 22446 || ||| Sbjct 276143 GGTGGT 276148 >seq2154 Length=352369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||||||||| | || ||||| || | ||| || | || | Sbjct 250914 AAGATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCA 250855 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | || || | ||| ||||| |||| || || || ||||| || ||| Sbjct 250854 TCAGATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGAT 250795 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||| ||| || ||||| ||||| || || || ||| || || | || |||||| Sbjct 250794 CAACAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTAC 250735 Query 22396 AACATTCA 22403 || || || Sbjct 250734 AATATACA 250727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419707435951300