Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2020 100 6e-16 seq3519 98.7 2e-15 seq735 98.7 2e-15 seq3833 96.9 7e-15 seq2728 96.9 7e-15 seq100 93.3 9e-14 seq3307 87.8 4e-12 seq1143 84.2 4e-11 seq391 84.2 4e-11 >seq2020 Length=367924 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 249910 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 249851 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 249850 CCCCACGTTGGGC 249838 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 302783 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 302842 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 302843 CCCACGTTGGGC 302854 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 304245 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 304186 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 304185 CCCACGTTGGGC 304174 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 314005 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 313946 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 313945 CCCACGTTGGGC 313934 >seq3519 Length=200484 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 147417 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 147358 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 147357 CCCACGTTGGGC 147346 >seq735 Length=534192 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 354216 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 354157 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 354156 CCCACGTTGGGC 354145 >seq3833 Length=786599 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| || ||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 191644 AGCCCGGCTACCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 191585 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 191584 CCCCACGTTGGGC 191572 >seq2728 Length=303197 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||| Sbjct 182063 CCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCC 182122 Query 142565 CCACATCGGGC 142575 |||| | |||| Sbjct 182123 CCACGTTGGGC 182133 >seq100 Length=41664 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||||||| Sbjct 230 CGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCCC 289 Query 142567 ACATCGGGC 142575 || | |||| Sbjct 290 ACGTTGGGC 298 >seq3307 Length=267487 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 40210 ATGTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGA 40269 Query 142111 CCCCCGCCAGAGA 142123 |||| |||| || Sbjct 40270 TCCCCACCAGGGA 40282 >seq1143 Length=464327 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 372981 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 372922 Query 142113 CCCGCCAGAGA 142123 ||| |||| || Sbjct 372921 CCCACCAGGGA 372911 >seq391 Length=615280 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 38258 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 38317 Query 142113 CCCGCCAGAGA 142123 ||| |||| || Sbjct 38318 CCCACCAGGGA 38328 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| ||| ||||||||||||||||||||||||||| | |||||||| | Sbjct 39660 GTCCCTGTAGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATC 39719 Query 142113 CCCGCCAGAGACGC 142126 ||| |||| || || Sbjct 39720 CCCACCAGGGATGC 39733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027783859980820