Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2347 109 4e-19 seq3263 100 2e-16 seq3546 96.9 3e-15 >seq2347 Length=330313 Score = 109 bits (120), Expect = 4e-19 Identities = 86/99 (87%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT-GAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| ||||||||||||||| | ||| |||||||||||| Sbjct 23230 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAAC 23289 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || |||||| |||| ||| || ||||| Sbjct 23290 CACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 23328 Score = 109 bits (120), Expect = 4e-19 Identities = 86/99 (87%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT-GAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| ||||||||||||||| | ||| |||||||||||| Sbjct 23230 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAAC 23289 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || |||||| |||| ||| || ||||| Sbjct 23290 CACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAA 23328 >seq3263 Length=267844 Score = 100 bits (110), Expect = 2e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATA-TGCGC 37898 ||||||| | || ||||| ||| | || || || |||||||| | || | | ||| Sbjct 108160 TGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCA-CGGTTTCCTTCGC 108218 Query 37899 ATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTAC 37958 ||||| ||| || || || |||||||| ||||| | | | | || || | | Sbjct 108219 ATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAGAGCACTGGCCGAT 108278 Query 37959 GCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGC 38018 ||||||||||||||||| ||||| ||| ||||||| || || || | |||| || || Sbjct 108279 GCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAGTGGTTTTGTTGGA 108338 Query 38019 TGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGC 38078 ||| ||||||| ||||| || | || ||| | ||| | || | |||| || Sbjct 108339 TGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAGAGAAATTTTTGGA 108398 Query 38079 AAGATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTT 38120 || ||| |||| |||||||| | ||||| || |||||| Sbjct 108399 AAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTT 108440 >seq3546 Length=187496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 ||||||| ||||||| |||||||| |||||||||||||| |||||| ||||||| |||| Sbjct 66802 CATGTATAAGCTCTAGTATTACCACAGTTATCCAAGTAACTTGAGTACGATCTAAAGAAC 66743 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 || ||||||| || |||||| ||| ||| || ||||| Sbjct 66742 CACAACTGATTTAATGAGCCTTTCACGGTTTCACCTTAA 66704 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 ||||||| ||||||| |||||||| |||||||||||||| |||||| ||||||| |||| Sbjct 66802 CATGTATAAGCTCTAGTATTACCACAGTTATCCAAGTAACTTGAGTACGATCTAAAGAAC 66743 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 || ||||||| || |||||| ||| ||| || ||||| Sbjct 66742 CACAACTGATTTAATGAGCCTTTCACGGTTTCACCTTAA 66704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397042946424040