Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3666 152 1e-31 seq3604 152 1e-31 seq3866 123 6e-23 seq1800 96.9 8e-15 >seq3666 Length=820529 Score = 152 bits (168), Expect = 1e-31 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| || |||||||||||||| | ||| ||||| || || Sbjct 197255 TTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAA 197196 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| |||||||||| |||||| ||||| || || |||||||| ||||| || || Sbjct 197195 GATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATT 197136 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||||| || || ||||| | ||||| || || || |||| ||| ||||| Sbjct 197135 TTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGAC 197076 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 197075 AAAGATCTGCAT 197064 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| || |||||||||||||| | ||| ||||| || || Sbjct 197483 TTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAA 197424 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| ||||| |||||| |||||||| || ||||| || || || || || Sbjct 197423 GATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATT 197364 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||||| ||||||||||| | || || ||||| || || || ||||| || Sbjct 197363 TTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTAC 197304 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 197303 GAAGATTTGCAT 197292 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| || |||||||||||||| | ||| ||||| || || Sbjct 197711 TTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAA 197652 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| ||||| |||||| |||||||| || ||||| || || || || || Sbjct 197651 GATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATT 197592 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||||| ||||||||||| | || || ||||| || || || ||||| || Sbjct 197591 TTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTAC 197532 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 197531 GAAGATTTGCAT 197520 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| || |||||||||||||| | ||| ||||| || || Sbjct 197939 TTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAA 197880 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| ||||| |||||| |||||||| || ||||| || || || || || Sbjct 197879 GATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATT 197820 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||||| ||||||||||| | || || ||||| || || || ||||| || Sbjct 197819 TTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTAC 197760 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 197759 GAAGATTTGCAT 197748 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | || | |||| || ||| || ||||| || ||||||| Sbjct 198203 TCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 198144 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||||||||| | ||| ||||| || ||||||| ||| ||||| ||| Sbjct 198143 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 198084 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| || ||||| || || || || ||||| || ||||| |||||||| Sbjct 198083 GATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTAC 198024 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| || || || ||||| ||||| || ||||| Sbjct 198023 TTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq3604 Length=163256 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||||| | |||| || |||||| || ||||| ||||| | Sbjct 65655 TCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65714 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||||||||| |||||||||| |||||||| ||| Sbjct 65715 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 65774 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 65775 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 65834 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || ||||| || || || || |||||| Sbjct 65835 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||||| | |||| || |||||| || ||||| ||||| | Sbjct 66339 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66398 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||||||||| |||||||||| |||||||| ||| Sbjct 66399 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66458 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 66459 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66518 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||| || || || |||||||| || || || || ||||| Sbjct 66519 TTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCAT 66566 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||||| | |||| || |||||| || ||||| ||||| | Sbjct 65883 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65942 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||||||||| |||||||||| |||||||| ||| Sbjct 65943 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66002 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 66003 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66062 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || ||||| || || || || |||||| Sbjct 66063 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||||| | |||| || |||||| || ||||| ||||| | Sbjct 66111 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66170 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||||||||| |||||||||| |||||||| ||| Sbjct 66171 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66230 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 66231 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66290 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || ||||| || || || || |||||| Sbjct 66291 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 >seq3866 Length=782398 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| || | | || ||||| ||||| | || || || ||||||||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| |||||| |||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 |||| || || || || || || ||||| |||||||| || || || || ||||| Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 288466 ATCTGCAT 288473 || ||||| Sbjct 247806 ATTTGCAT 247799 >seq1800 Length=381758 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| || ||||| | |||||| ||||| || ||||| || ||||| ||| Sbjct 273724 CCTTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGATGACTCTACCTCG 273665 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTA 288480 || |||||||| ||||| || | ||||| ||||| ||||||||| || || Sbjct 273664 AGAGTGATCGTTTTCCCAGTTAAGGTCTTCACGAAGATCTGCATTTTGCTA 273614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179593640425560