Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3466 113 5e-20 seq3799 107 2e-18 seq3372 107 2e-18 seq3432 105 7e-18 seq2153 102 9e-17 seq15 100 3e-16 seq3463 93.3 5e-14 >seq3466 Length=1849564 Score = 113 bits (124), Expect = 5e-20 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1025299 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1025358 Query 57058 TCACCACTATACTACCGAGGAT--TGAATAT 57086 | |||||||||||||||||||| ||||||| Sbjct 1025359 TTACCACTATACTACCGAGGATTATGAATAT 1025389 Score = 111 bits (122), Expect = 2e-19 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 56993 TTATGAAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||||||||| ||| |||| |||| | |||||||||| |||||||||||||||||||| Sbjct 1112738 TTATGAAAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1112679 Query 57051 GACATACTCACCACTATACTACCGAGGATT 57080 | ||||| ||||||||||||||||||||| Sbjct 1112678 GGGATACTTACCACTATACTACCGAGGATT 1112649 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 1024015 AAAAGTTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1024074 Query 57056 ACTCACCACTATACTACCGAGGATT 57080 ||| ||||||||||||||||||||| Sbjct 1024075 ACTTACCACTATACTACCGAGGATT 1024099 >seq3799 Length=1659003 Score = 107 bits (118), Expect = 2e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 445325 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 445266 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 445265 CTTACCACTATACTACCGAGGATT 445242 >seq3372 Length=258379 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 159618 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 159677 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 159678 TTACCACTATACTACCGAGGACTG 159701 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 109835 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 109894 Query 57056 ACTCACCACTATACTACCGAGGATT 57080 ||| ||||||||||||||||||||| Sbjct 109895 ACTTACCACTATACTACCGAGGATT 109919 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 146330 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 146271 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || |||||||||||||||||||||| Sbjct 146270 CTTACCACTATACTACCGAGGATTG 146246 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| ||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 106503 AAAAGTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 106444 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 106443 CTTACCACTATACTACCGAGGATT 106420 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 139724 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 139783 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 139784 CTTACCACTATACTACCGAGGA 139805 >seq3432 Length=246084 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 64338 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 64397 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 64398 TTACCACTATACTACCGAGGA 64418 >seq2153 Length=1080828 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 203803 AAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 203744 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||||||||||| Sbjct 203743 CTTACCACTATACTACCGAGGAT 203721 >seq15 Length=696860 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 308089 AAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 308030 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 308029 CTTACCACTATACTACCGAGGA 308008 >seq3463 Length=219725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| |||| |||| | |||||||||| |||||||||||||||||||| ||||| Sbjct 8586 AAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGAGGATACTT 8527 Query 57060 ACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 8526 ACCACTATACTACCGAGGA 8508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185503556800