Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3666 118 1e-21 seq1800 98.7 1e-15 seq3866 96.9 3e-15 seq3604 91.5 1e-13 >seq3666 Length=820529 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||||| |||||||||| ||| Sbjct 197494 TGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGC 197435 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || |||||||| ||||| || || Sbjct 197434 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 197375 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | || ||||| | |||| |||||| || || Sbjct 197374 GCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTG 197315 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| |||||||| Sbjct 197314 AGGGTCTTTACGAAGATTTGCAT 197292 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||||| |||||||||| ||| Sbjct 197722 TGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGC 197663 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || |||||||| ||||| || || Sbjct 197662 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 197603 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | || ||||| | |||| |||||| || || Sbjct 197602 GCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTG 197543 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| |||||||| Sbjct 197542 AGGGTCTTTACGAAGATTTGCAT 197520 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||||| |||||||||| ||| Sbjct 197950 TGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGC 197891 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || |||||||| ||||| || || Sbjct 197890 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 197831 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | || ||||| | |||| |||||| || || Sbjct 197830 GCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGTG 197771 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| |||||||| Sbjct 197770 AGGGTCTTTACGAAGATTTGCAT 197748 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||||| |||||||||| ||| Sbjct 197266 TGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGC 197207 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | ||||| || || || || || ||||| || ||||| | |||| Sbjct 197206 TTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGA-TTTT 197148 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | | |||| | || ||||| | ||| | || || || || Sbjct 197147 AGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 197088 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||| || || || ||||| || Sbjct 197087 CAAAGTTTTGACAAAGATCTGCATGTT 197061 >seq1800 Length=381758 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||||||| || | || | || ||||||||||||||||||||||||| Sbjct 276148 ACCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGA 276089 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | |||||||| |||||||| ||| | || | || ||||| || ||||| Sbjct 276088 CAGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGG 276029 Query 64336 AATTCCT 64342 ||| ||| Sbjct 276028 AATACCT 276022 >seq3866 Length=782398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| ||||| ||||| | | || || | |||||||||||||||||||| | || Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 | || || || ||||| || || |||||||| ||||| | |||| ||||| ||| || Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTG-AATTTTAGCTTTGACATTTTC 247868 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || ||| | || || || | || | |||||| || || | ||||| ||||| Sbjct 247867 GATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAA 247808 Query 64435 AATTTGCATTTTAAT 64449 ||||||||| || || Sbjct 247807 AATTTGCATGTTGAT 247793 >seq3604 Length=163256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| ||||| || | | || || | ||| Sbjct 65671 AGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCT 65730 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||| | || | ||||| ||||| || || |||||||| || ||| Sbjct 65731 TCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCT 65790 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||||| ||| || | | || | || ||||| | ||| | ||| Sbjct 65791 TGGATTTTA-GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGT 65849 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | |||||| || |||||||||||| Sbjct 65850 TTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| ||||| || | | || || | ||| Sbjct 65899 AGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCT 65958 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||| | || | ||||| ||||| || || |||||||| || ||| Sbjct 65959 TCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCT 66018 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||||| ||| || | | || | || ||||| | ||| | ||| Sbjct 66019 TGGATTTTA-GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGT 66077 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | |||||| || |||||||||||| Sbjct 66078 TTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| ||||| || | | || || | ||| Sbjct 66127 AGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCT 66186 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||| | || | ||||| ||||| || || |||||||| || ||| Sbjct 66187 TCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCT 66246 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||||| ||| || | | || | || ||||| | ||| | ||| Sbjct 66247 TGGATTTTA-GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGT 66305 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | |||||| || |||||||||||| Sbjct 66306 TTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499619692848800