Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3666 114 1e-20 seq3604 105 6e-18 >seq3666 Length=820529 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||||| ||||||||||| ||||| ||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || ||||| || ||||||| ||||| ||||| || || Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| |||||| || | | ||| | || || | ||| ||| Sbjct 197170 ATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACT 197111 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||| || |||| |||||| ||||| ||||||||| Sbjct 197110 TCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 >seq3604 Length=163256 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || || || | ||||| ||||| ||||||||||| || Sbjct 65655 TCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65714 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | |||||||| ||| ||||||||||||| || || || || Sbjct 65715 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 65774 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||| || | | ||| | | ||||| | || || Sbjct 65775 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 65834 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | |||||||| || |||||||| |||||||| ||||| Sbjct 65835 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 65882 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||| || | || || ||| || | |||||||| Sbjct 65914 GTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCG 65973 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || || || |||||||| |||||| || Sbjct 65974 GCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTC 66033 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | ||||| | || ||||| | || | |||||||| || |||||| Sbjct 66034 ACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTT 66093 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 66094 TTCACAAAAATTTGCAT 66110 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||| || | || || ||| || | |||||||| Sbjct 66142 GTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCG 66201 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || || || |||||||| |||||| || Sbjct 66202 GCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTC 66261 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | ||||| | || ||||| | || | |||||||| || |||||| Sbjct 66262 ACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTT 66321 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 66322 TTCACAAAAATTTGCAT 66338 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||| || | || || ||| || | |||||||| Sbjct 66370 GTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCG 66429 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||| || || || || || || |||||||| |||||| || Sbjct 66430 GCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTC 66489 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | ||||| | || ||||| | || | |||||||| ||||||||| Sbjct 66490 ACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTT 66549 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 66550 TTCACAAAGATTTGCAT 66566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475476906084800