Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3604 118 2e-21 seq3866 111 4e-19 seq3666 111 4e-19 >seq3604 Length=163256 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || || || | |||||||||| || || Sbjct 65662 CGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTA 65721 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | ||||| ||||| || |||||| Sbjct 65722 CGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCT 65781 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || ||||| ||| | | ||| | | |||||| ||||| Sbjct 65782 TCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAA 65840 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||||||||| Sbjct 65841 AGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTG 65879 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || || || | |||||||||| || || Sbjct 65890 CGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTA 65949 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | ||||| ||||| || |||||| Sbjct 65950 CGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCT 66009 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || ||||| ||| | | ||| | | |||||| ||||| Sbjct 66010 TCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAA 66068 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||||||||| Sbjct 66069 AGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTG 66107 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || || || | |||||||||| || || Sbjct 66118 CGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTA 66177 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | ||||| ||||| || |||||| Sbjct 66178 CGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCT 66237 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || ||||| ||| | | ||| | | |||||| ||||| Sbjct 66238 TCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAA 66296 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||||||||| Sbjct 66297 AGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTG 66335 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || || || | |||||||||| || || Sbjct 66346 CGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTA 66405 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | ||||| ||||| || |||||| Sbjct 66406 CGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCT 66465 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || ||||| ||| | | ||| | | |||||| ||||| Sbjct 66466 TCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAA 66524 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||| ||||| Sbjct 66525 AGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTG 66563 >seq3866 Length=782398 Score = 111 bits (122), Expect = 4e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || || | |||||| | ||||||||| |||||||| |||||||||| Sbjct 247988 CCTTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 247929 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGAT 199558 | | ||| || || || || || |||||| || ||||| ||| || || || | Sbjct 247928 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTGACATTT 247870 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||| | | || || || | ||||| ||||| || || || |||||||| Sbjct 247869 TCGATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACG 247810 Query 199619 AAAATTTG 199626 |||||||| Sbjct 247809 AAAATTTG 247802 >seq3666 Length=820529 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| ||||| || ||||| |||| ||||||||| | | || Sbjct 198197 TCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGT 198138 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 198137 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 198078 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| || ||| | || || | || |||||| ||||| Sbjct 198077 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 198018 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 198017 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTG 197979 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 197513 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197454 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 197453 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197394 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| || ||| | || || | || |||||| ||||| Sbjct 197393 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197334 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 197333 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTG 197295 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 197741 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197682 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 197681 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197622 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| || ||| | || || | || |||||| ||||| Sbjct 197621 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197562 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 197561 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTG 197523 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 197969 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197910 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 197909 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197850 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||| || ||| | || || | || |||||| ||||| Sbjct 197849 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197790 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 197789 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTG 197751 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 197285 TCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197226 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | |||||| || || || || || Sbjct 197225 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACC 197166 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || || || ||| || || || ||| | || || | || || || |||| Sbjct 197165 TTCCTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCA 197107 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| || | |||||| ||||| || || Sbjct 197106 AAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTG 197067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178860878169340