Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq40 109 5e-19 seq3666 104 2e-17 seq3866 87.8 2e-12 seq3604 86.0 6e-12 >seq40 Length=47542 Score = 109 bits (120), Expect = 5e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || ||||| || || ||||||||||| || || ||||| | || ||||| | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||||| || || ||||| || || || || | || || ||||| || || | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTT--CT-TTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | || | | || || || || |||| || | ||| ||||| ||| ||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCT---TATCCACTTCAGAGCCCAAT 40057 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 | ||||||| ||| || |||||||| ||||| || || || || ||| Sbjct 40056 CTGCCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 40010 >seq3666 Length=820529 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| || || ||||| || | || || || | | Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| |||||||| || || || | |||||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| ||||| || |||||||||| Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 198155 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || || |||||| ||||| | |||| || Sbjct 198156 ATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGG 198202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| | || || ||||| ||||| | || || ||| | Sbjct 197061 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 197120 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| |||||| ||||||| ||||| || || || || | || Sbjct 197121 TCTGATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGAT 197180 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | || | || || || || || || |||| ||||| || ||||||| Sbjct 197181 CAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTAC 197240 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| | || || || |||||| ||||| | |||| || Sbjct 197241 AACATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGG 197290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| || || ||||| || | || || || | | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| |||||||| || || || | |||||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| ||||| || |||||||||| Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| ||||| | |||| || Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| || || ||||| || | || || || | | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| |||||||| || || || | |||||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| ||||| || |||||||||| Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| ||||| | |||| || Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || ||||| || || ||||| || | || || || | | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| |||||||| || || || | |||||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| ||||| || |||||||||| Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| ||||| | |||| || Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197974 >seq3866 Length=782398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| || || || || ||||||||| | || |||||| | Sbjct 247796 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 247855 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| ||||| | || ||||| || || || |||| Sbjct 247856 TCTGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGAT 247915 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | ||| ||||| ||||| || || | || || | || || Sbjct 247916 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTAT 247975 Query 38421 AACATCCAAAAGG 38433 ||||||||||||| Sbjct 247976 AACATCCAAAAGG 247988 >seq3604 Length=163256 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || |||||||||||||| | || || || | | Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | ||| | |||| ||||||| ||||| || ||||| || | ||||| Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| |||| || | || || | |||||||| Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65704 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || ||| | || || || || || || ||| Sbjct 65703 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGT 65667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || |||||||||||||| | || || || | | Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | ||| | |||| ||||||| ||||| || ||||| || | ||||| Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| |||| || | || || | |||||||| Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65932 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || ||| | || || || || || || ||| Sbjct 65931 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGT 65895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || |||||||||||||| | || || || | | Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | ||| | |||| ||||||| ||||| || ||||| || | ||||| Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| |||| || | || || | |||||||| Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 66160 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || ||| | || || || || || || ||| Sbjct 66159 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGT 66123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || || ||||| || || |||||||||||||| | || || || | Sbjct 66569 AAGATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCT 66510 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | ||| | |||| ||||||| ||||| || ||||| || | ||| Sbjct 66509 TCGGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGAC 66450 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | || | ||| || ||||| |||| || | || || | |||||| Sbjct 66449 CAACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTAC 66390 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || || ||| | || || || || || || ||| Sbjct 66389 AATATTCAGAAAGAATCTACACTTCACTTAGTACTCCGT 66351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500147666316800