Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3666 158 3e-33 seq3866 132 1e-25 seq3604 129 1e-24 seq1800 87.8 4e-12 >seq3666 Length=820529 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | |||||| | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 197513 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197454 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 197453 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197394 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||| || || ||||||| || || ||| ||||| | Sbjct 197393 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197334 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | || |||||||| | |||||| Sbjct 197333 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | |||||| | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 197741 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197682 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 197681 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197622 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||| || || ||||||| || || ||| ||||| | Sbjct 197621 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197562 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | || |||||||| | |||||| Sbjct 197561 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | |||||| | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 197969 TCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197910 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 197909 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 197850 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||| || || ||||||| || || ||| ||||| | Sbjct 197849 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 197790 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | || |||||||| | |||||| Sbjct 197789 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || | ||||||||| || || || || || ||||| |||| ||| || Sbjct 198197 TCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGT 198138 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 198137 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 198078 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||| || || ||||||| || || ||| ||||| | Sbjct 198077 TTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAA 198018 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | || |||||||| | |||||| Sbjct 198017 TGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 197285 TCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGT 197226 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | || ||||| ||||| || || || Sbjct 197225 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACC 197166 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| || || || ||||||| || || || ||||| | Sbjct 197165 TTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAA 197106 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||||||||| || || | ||||| Sbjct 197105 AGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 >seq3866 Length=782398 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || || ||||| | | ||| | |||||||| |||||||| || |||||||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||| || || || || |||||||| ||||||||||| ||||| || || Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || ||||| ||| || || |||||||| | ||||| ||||| | ||||| ||||| Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 195133 ACTTGCAT 195140 | |||||| Sbjct 247806 ATTTGCAT 247799 >seq3604 Length=163256 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||||||||| || | | || | |||||||| | || Sbjct 66363 GTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTG 66422 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 66423 TTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 66482 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||||||| ||| ||||| | || | || || || || Sbjct 66483 AGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 66542 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || |||||| || || | |||||| Sbjct 66543 CAGAGTTTTCACAAAGATTTGCAT 66566 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||||||||| || | | || | |||||||| | || Sbjct 65679 GTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTG 65738 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 65739 TTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 65798 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||||||| ||| ||||| | || | || || || || Sbjct 65799 AGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 65858 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 65859 AAGAGTTTTCACAAAAATTTGCATT 65883 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||||||||| || | | || | |||||||| | || Sbjct 65907 GTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTG 65966 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 65967 TTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 66026 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||||||| ||| ||||| | || | || || || || Sbjct 66027 AGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 66086 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 66087 AAGAGTTTTCACAAAAATTTGCATT 66111 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| ||||||||||| || | | || | |||||||| | || Sbjct 66135 GTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTG 66194 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | ||| ||||||||||| || || ||||| |||||||| ||||| Sbjct 66195 TTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 66254 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||||||| ||| ||||| | || | || || || || Sbjct 66255 AGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 66314 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 66315 AAGAGTTTTCACAAAAATTTGCATT 66339 >seq1800 Length=381758 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| | ||| || || || ||||||||||| |||||||| | ||||| Sbjct 276142 TCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAGAGT 276083 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| || ||||| || || || || | ||||| || || |||||||| || Sbjct 276082 ACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGAATACC 276023 Query 195039 T 195039 | Sbjct 276022 T 276022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109424454763340