Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq40 161 1e-34 seq2 109 6e-19 seq48 105 8e-18 >seq40 Length=47542 Score = 161 bits (178), Expect = 1e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| |||| ||||| || |||||||| ||||| | ||||| ||| | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| |||| | |||||| |||||| || ||||||||||| || || ||||| | Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| |||||| ||| || | || | | ||| ||||| ||||| |||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| ||||||||||| ||||| || || |||| |||||||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA 40012 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| ||| || |||||||| |||||||||||||| ||||| || || || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || ||||||||||| || || || | || ||||| | |||||| ||| || | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || ||||| ||| ||||||||||||||||| || ||||| || | Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGT 39731 Query 19414 TCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 ||||| || ||| |||||||||||| || ||| Sbjct 39730 TCATCATCAGTCAATCTATTCCAATCATCAAGATC 39696 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19456 AAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATA 19515 |||| ||||||||||| |||||||||| || ||| ||||||||||||| ||| ||| Sbjct 39622 AAATTGACTTCTTCAACATTCCAAAAAGACGCTTCTTGTTTTTTATACATGGCCCAAATA 39563 Query 19516 TCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCC 19575 ||| |||| |||||||||||| ||||| | || ||| ||||| | | ||||| Sbjct 39562 TCATCATATATTATAGGAAATATGACAAAACGTCTTGGATTATCTTTCAATAAGGGTTCG 39503 Query 19576 ATT 19578 ||| Sbjct 39502 ATT 39500 >seq2 Length=2033018 Score = 109 bits (120), Expect = 6e-19 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| ||| || || || || | ||| | | ||||| || ||| || ||| | ||| Sbjct 1646808 TCCTTGACTAATTGGTGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAATTC 1646749 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| ||||| || |||| |||||| | || |||||||||| || || || || | Sbjct 1646748 ACAACTAGCTTCTAACGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCG 1646689 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 || ||| | ||| |||| ||| | ||| |||||| || ||||||| Sbjct 1646688 TGATTCAGGTGAGCCAAATGGAAATCTCATCATTGAGAATAAATCTGCTAACCCTTGAAT 1646629 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAA 47753 |||||||||||| || | ||| ||||||||||| Sbjct 1646628 ACCAATACCAATAGGACGATGTCTTTTATTAGAA 1646595 Score = 105 bits (116), Expect = 8e-18 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 ||||||||| ||||| | ||| |||||||||||| || || ||| |||| ||| Sbjct 1635169 CCTTTACTTGTCGGA---CTATTTGGATATGTTTTATATGGTCCATATTTAGTAGCTAGT 1635225 Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 |||||||||||||| || |||| ||| || || |||||| |||| | |||| ||| | Sbjct 1635226 TCACAACTTGCTTCTAAAGCACCATAGTAAATAGTTTCATGAATTTGTTTGTTAAGAATT 1635285 Query 47658 CTTGCTTC-TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || ||||| | || | ||||||||||| ||| |||||| |||||||| Sbjct 1635286 CTAGCTTCTTTATTA-TCAAAAGGATATTTCATTTTAATAAATAAATCTGCTAATCCTTG 1635344 Query 47717 AACACCAATACCAAT 47731 | ||| || ||||| Sbjct 1635345 GATACCGATTCCAAT 1635359 Score = 105 bits (116), Expect = 8e-18 Identities = 108/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||||||| | ||||| ||| | ||||| ||| ||||||| ||||||||||| Sbjct 1647075 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTATAGGGTTCTATAGA 1647019 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||||||||| |||| |||||||| ||||| || |||||||| | ||| | ||| || Sbjct 1647018 TTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATTGGTGCTAATAACAATGA 1646959 Query 47447 ATTTCTTACTCCATATTT 47464 ||||||||| |||| ||| Sbjct 1646958 ATTTCTTACACCATGTTT 1646941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 9/208 (4%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 |||||||||| | ||||||||| || |||| | |||| | || | ||||| Sbjct 1644852 CCAGGACATTTACGAGGACACATTAAGCTCCAAGGTTGATCAGCCTCAACACGTCTCATA 1644793 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 ||| ||| |||||||||||||| | ||||||||| |||||| || ||||| ||||||| Sbjct 1644792 AATTCATCAGGTATCCAAAGAGCCAAAAATAAATCTCTAGTTTTTTCTTCTTTATTGCCA 1644733 Query 48276 CTATTCCTTTTA---AGTTCAAGA-AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 ||| ||||| | ||| | |||| | ||||||||||||||| || || | || Sbjct 1644732 GTAT---TTTTACGTAATTCGGTATAAGTATA-TATATCAGCATGCCAAGGCTCAATGTA 1644677 Query 48332 TATTGCCATTACACCTGGTCGTTTATTA 48359 | || || | ||||||| | ||||| Sbjct 1644676 AACAGCAATCGCCCCTGGTC-TCTATTA 1644650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||||||||| | | | || |||| | | |||||| ||| ||||||| Sbjct 1647488 TCCATCCATAGAAATGTACAGATGATATTTTACTAATAGTAGGTTGCTCAATGTGAATAT 1647429 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||| ||||| || |||| ||| |||||| ||||||||||| || | Sbjct 1647428 TTAATGACTGAGATTGATCGATGTATGCTGCTCGATCAGCAGCCATATCTAATATGATTT 1647369 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || ||||| |||||| || | || ||| ||||| ||||| Sbjct 1647368 TTTGAGATAGTTCCCAATTTGTTTTGTATAATTCTTTTATGTCGTCTGG 1647320 >seq48 Length=686774 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47358 TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGAT 47417 |||| ||| |||| |||||||||||||||||||||||||||| |||||| || ||||| Sbjct 302942 TATAAATTTGTTGTGTATGGTTCTATAGATTCATTATTTCCAAGAATTTGTGCTGTTGAA 303001 Query 47418 GCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATT 47463 || |||||||| | ||| | ||| || |||||| ||||||| || Sbjct 303002 GCCGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTT 303047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||||||||| | | | || |||| | | | |||| ||| ||||||| Sbjct 302499 TCCAACCATAGAAATGTACAGATGATATTTTACTAACAGTTGGTTGCTCAATGTGAATAT 302558 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || ||| |||||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 302559 TTAATGACTGAGATTGATCAATGAATGCCGCTCGATCTGCAGCCATATCTAATATAATTT 302618 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || ||||| ||||||||| | || ||| || || ||||| Sbjct 302619 TTTGAGATAGTTCCCAATTTGTTTTATACAATTCTTTTATATCATCTGG 302667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080554032800