Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq40 132 6e-26 >seq40 Length=47542 Score = 132 bits (146), Expect = 6e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||| |||| ||||| || ||||| ||||||||||| |||| ||| || Sbjct 40231 TCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCTTC 40172 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 |||||||||| ||| |||||| |||||| || || ||||||||||| || |||||||| Sbjct 40171 ATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATGCA 40112 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 || | | | ||| ||||| | || ||| ||||| || | |||||||||| Sbjct 40111 ACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTGCC 40052 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 ||| ||| ||||| || |||||||| || || || | ||||| Sbjct 40051 TTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || || |||||||||| ||||||||||||||| || || ||||| || || ||| ||| Sbjct 39913 ATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGA 39854 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||||||||| ||||| || | | |||||| || | | |||| | | | | | Sbjct 39853 AACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGA 39794 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||| ||| ||||| || || | || | |||||| || Sbjct 39793 TTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGA 39734 Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663 | |||||||| | ||| | |||||||||| || ||| Sbjct 39733 CGTTCATCATCAGTCAATCTATTCCAATCATCAAGATC 39696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592287036080800