Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3666 159 3e-34 seq3604 158 1e-33 seq3866 125 6e-24 seq2154 120 2e-22 seq3263 111 1e-19 seq3365 102 6e-17 seq1800 96.9 3e-15 >seq3666 Length=820529 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| || || || |||||||||||||||||||| || ||||| |||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| ||||||||||||||||| || || Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| ||||| ||| ||| |||| | | ||||| | || ||| Sbjct 197170 ATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACT 197111 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| ||||| || || |||||||| ||||| ||||||||| Sbjct 197110 TCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| ||||| || |||||||||||||||||||| || ||||| |||| Sbjct 197518 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197459 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| |||||||| ||||| || || || Sbjct 197458 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197399 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || || ||| |||| | | ||||| | ||| ||| Sbjct 197398 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197339 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | || ||||| || || ||||| Sbjct 197338 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| ||||| || |||||||||||||||||||| || ||||| |||| Sbjct 197746 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197687 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| |||||||| ||||| || || || Sbjct 197686 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197627 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || || ||| |||| | | ||||| | ||| ||| Sbjct 197626 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197567 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | || ||||| || || ||||| Sbjct 197566 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| ||||| || |||||||||||||||||||| || ||||| |||| Sbjct 197974 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197915 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | |||||| || ||||| |||||||| ||||| || || || Sbjct 197914 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197855 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||| || || || ||| |||| | | ||||| | ||| ||| Sbjct 197854 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197795 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | || ||||| || || ||||| Sbjct 197794 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 >seq3604 Length=163256 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||||| ||||| ||||||||||| || |||||||| || | Sbjct 65882 TTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 65941 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| |||||||| || || || || ||||| |||||||| || || | Sbjct 65942 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 66001 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| ||||| ||| ||| |||| | || ||| || | ||| | Sbjct 66002 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66061 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||| | ||||| |||||||| || | |||||| ||||| || ||||| | | |||| Sbjct 66062 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATTCCTCCACGAA 66121 Query 101481 GA 101482 || Sbjct 66122 GA 66123 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||||| ||||| ||||||||||| || |||||||| || | Sbjct 66110 TTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 66169 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| |||||||| || || || || ||||| |||||||| || || | Sbjct 66170 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 66229 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| ||||| ||| ||| |||| | || ||| || | ||| | Sbjct 66230 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66289 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||| | ||||| |||||||| || | |||||| ||||| || ||||| | | |||| Sbjct 66290 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATTCCTCCACGAA 66349 Query 101481 GA 101482 || Sbjct 66350 GA 66351 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||||| ||||| ||||||||||| || |||||||| || | Sbjct 66338 TTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 66397 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| |||||||| || || || || ||||| |||||||| || || | Sbjct 66398 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 66457 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| ||||| ||| ||| |||| | || ||| || | ||| | Sbjct 66458 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66517 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| |||||||| || | |||||| ||||| || ||||| Sbjct 66518 CTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCAT 66566 Score = 152 bits (168), Expect = 4e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| ||||| ||||||||||| || |||||||| || | | || | | |||| ||| Sbjct 65674 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCC 65733 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || || || ||||| |||||||| || || || || ||||| || ||||| Sbjct 65734 AATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 65793 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| |||| | || ||| || | ||| ||||| | ||||| |||||| Sbjct 65794 ATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTG 65853 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || | |||||| ||||| || ||||| | | |||||| Sbjct 65854 CCAGTAAGAGTTTTCACAAAAATTTGCATTCCTCCACGAAGA 65895 >seq3866 Length=782398 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| || || ||||| | | ||| | |||| || | ||||| || || || ||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 ||||| ||||||||||| || || |||||||||||||||||||| ||| ||| |||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||||||||| | || || ||||| |||| || || || || | ||||| || || Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 101462 ATCTGCATG 101470 || |||||| Sbjct 247806 ATTTGCATG 247798 >seq2154 Length=352369 Score = 120 bits (132), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | ||||| ||||| || || || | ||||||||||||| | Sbjct 250688 CCACCTCTTAAACGAAGTACTAAGTGAAGAGTTGACTCCT---GTATATTGTAATCAGAT 250744 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || ||||| || | | | |||||||| || ||| Sbjct 250745 AATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGAGGTTGTTGATCCGGGGGA 250804 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||||| ||||| ||||| | |||| | || || || | || | Sbjct 250805 ATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATAGAATCTGATGACTCAATC 250864 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||| | || || || || | ||||| ||||| || ||||| Sbjct 250865 TCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATTTGCAT 250911 >seq3263 Length=267844 Score = 111 bits (122), Expect = 1e-19 Identities = 235/347 (68%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 13637 ATGTAACAATCTATATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTA 13696 ||| || || ||| | || |||| || || |||||| | ||||| | | ||||| Sbjct 108457 ATGAAAGCATTTATGTCAAACTTTCTCTTGCATCCTTCATAGTTCATATACCTAATTTTT 108398 Query 13697 CCATAGATTGGTCGCTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAA 13756 ||| | ||| || || |||| | |||| ||| | || |||||||||||||| || Sbjct 108397 CCAAAAATTTCTCTTTCTCTCCACCCCTGATCATGAATACCACATATTGACCACATACAT 108338 Query 13757 CCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCG 13816 || || |||| | || ||||| || |||| || || ||||| |||| ||| ||||| Sbjct 108337 CCAACAAAACCACTTGGGTCGCGACCGTCCATGCTATACTTGTCATTGAGATAAATGGCA 108278 Query 13817 TTGATTAAAGCCACTGT-AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATAT 13875 | | | | | || | || | | || |||||| | ||| ||||||||||| || || Sbjct 108277 TCGGCCAGTG-CTCTATCTGGAGTATCAGTCCATTCCAGTATCTTTTTAGCCCAGTACAT 108219 Query 13876 TCTCATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAA 13935 | | | |||||||| ||||||| | || | |||| | || |||| ||||||| Sbjct 108218 GCGAAGGAAACCGTGCATCTTGCCTTCCTTTACCAACTGTATTTGTGCAGAATTCCACAG 108159 Query 13936 TATGTCATGAGTTTCGGAATTTTCTAATTCTCTTCTATTGTA-ACAA 13981 ||||| || || ||||| || ||| |||| |||| |||| Sbjct 108158 ATCATCATGTGTGCGTGACTTTTCCAACTCTTCTCTAGTGTACACAA 108112 >seq3365 Length=261510 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||||| ||||| || || || || |||||||||||||| | Sbjct 113884 CCACCTCTTAAGCGAAGTACTAAGTGAAGAGTTGACTCCTTCTGTATATTGTAATCAGAT 113825 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || ||||| || | |||||||||||| || ||| Sbjct 113824 AATGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGGGGA 113765 Query 101363 ATGCCT 101368 |||||| Sbjct 113764 ATGCCT 113759 >seq1800 Length=381758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | ||| || || ||||||||||||||||| || |||||||| | Sbjct 276147 CCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 276088 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | |||||| || |||||||||||||| || ||||| || ||| Sbjct 276087 AGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGA 276028 Query 101363 ATGCCT 101368 || ||| Sbjct 276027 ATACCT 276022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396258984835140